A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
134.8
nTPM
Monaco:
637.3
nTPM
Schmiedel:
467.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.8
HPA sample
nTPM
Classical monocyte nTPM: 73.8
Samples: 6
Max nTPM: 104.8
Min nTPM: 59.4
P10809_1003
104.8
P10809_1020
80.5
P10809_1039
72.2
P10809_1058
59.4
P10809_1080
63.8
P10809_1107
62.0
Intermediate monocyte nTPM: 118.2
Samples: 6
Max nTPM: 148.9
Min nTPM: 62.0
P10809_1004
117.2
P10809_1023
139.2
P10809_1042
142.1
P10809_1061
99.9
P10809_1081
62.0
P10809_1108
148.9
Non-classical monocyte nTPM: 134.8
Samples: 5
Max nTPM: 157.3
Min nTPM: 101.8
P10809_1005
135.8
P10809_1053
101.8
P10809_1072
141.5
P10809_1082
137.8
P10809_1109
157.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
637.3
Monaco sample
nTPM
Classical monocyte nTPM: 365.8
Samples: 4
Max nTPM: 468.3
Min nTPM: 303.3
RHH5313_R3680
340.0
RHH5221_R3593
468.3
RHH5250_R3622
303.3
RHH5279_R3651
351.4
Intermediate monocyte nTPM: 561.7
Samples: 4
Max nTPM: 628.2
Min nTPM: 435.1
RHH5314_R3681
435.1
RHH5222_R3594
628.2
RHH5251_R3623
568.9
RHH5280_R3652
614.6
Non-classical monocyte nTPM: 637.3
Samples: 4
Max nTPM: 806.2
Min nTPM: 472.8
RHH5315_R3682
472.8
RHH5223_R3595
806.2
RHH5252_R3624
643.2
RHH5281_R3653
626.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
467.7
Schmiedel sample id
TPM
Classical monocyte TPM: 231.8
Samples: 91
Max TPM: 317.1
Min TPM: 158.6
MONOCYTES_1
317.1
MONOCYTES_2
312.8
MONOCYTES_3
309.8
MONOCYTES_4
309.6
MONOCYTES_5
307.1
MONOCYTES_6
299.7
MONOCYTES_7
292.4
MONOCYTES_8
289.6
MONOCYTES_9
285.1
MONOCYTES_10
284.6
MONOCYTES_11
281.0
MONOCYTES_12
274.8
MONOCYTES_13
273.1
MONOCYTES_14
271.9
MONOCYTES_15
268.2
MONOCYTES_16
261.2
MONOCYTES_17
260.7
MONOCYTES_18
260.7
MONOCYTES_19
260.3
MONOCYTES_20
259.2
MONOCYTES_21
257.6
MONOCYTES_22
257.0
MONOCYTES_23
253.6
MONOCYTES_24
252.1
MONOCYTES_25
252.0
MONOCYTES_26
251.9
MONOCYTES_27
248.8
MONOCYTES_28
247.5
MONOCYTES_29
247.3
MONOCYTES_30
246.9
MONOCYTES_31
245.8
MONOCYTES_32
243.6
MONOCYTES_33
242.9
MONOCYTES_34
242.0
MONOCYTES_35
240.4
MONOCYTES_36
235.7
MONOCYTES_37
234.4
MONOCYTES_38
232.9
MONOCYTES_39
231.2
MONOCYTES_40
229.9
MONOCYTES_41
229.0
MONOCYTES_42
227.3
MONOCYTES_43
226.2
MONOCYTES_44
225.7
MONOCYTES_45
225.5
MONOCYTES_46
223.2
MONOCYTES_47
221.7
MONOCYTES_48
221.0
MONOCYTES_49
220.7
MONOCYTES_50
219.7
MONOCYTES_51
219.7
MONOCYTES_52
217.9
MONOCYTES_53
217.7
MONOCYTES_54
217.2
MONOCYTES_55
216.9
MONOCYTES_56
216.7
MONOCYTES_57
216.5
MONOCYTES_58
215.8
MONOCYTES_59
215.5
MONOCYTES_60
215.4
MONOCYTES_61
214.4
MONOCYTES_62
213.0
MONOCYTES_63
212.8
MONOCYTES_64
212.0
MONOCYTES_65
207.7
MONOCYTES_66
207.6
MONOCYTES_67
207.3
MONOCYTES_68
207.2
MONOCYTES_69
206.3
MONOCYTES_70
205.6
MONOCYTES_71
205.6
MONOCYTES_72
204.9
MONOCYTES_73
203.7
MONOCYTES_74
203.1
MONOCYTES_75
200.0
MONOCYTES_76
199.6
MONOCYTES_77
199.2
MONOCYTES_78
198.3
MONOCYTES_79
198.1
MONOCYTES_80
196.7
MONOCYTES_81
193.0
MONOCYTES_82
192.7
MONOCYTES_83
190.7
MONOCYTES_84
189.7
MONOCYTES_85
188.8
MONOCYTES_86
186.0
MONOCYTES_87
182.6
MONOCYTES_88
180.1
MONOCYTES_89
178.7
MONOCYTES_90
163.8
MONOCYTES_91
158.6
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Non-classical monocyte TPM: 467.7
Samples: 90
Max TPM: 692.8
Min TPM: 343.1
M2_1
692.8
M2_2
590.5
M2_3
583.6
M2_4
582.7
M2_5
575.1
M2_6
566.8
M2_7
562.5
M2_8
549.1
M2_9
548.6
M2_10
548.1
M2_11
544.7
M2_12
538.5
M2_13
533.1
M2_14
528.1
M2_15
522.1
M2_16
517.6
M2_17
517.5
M2_18
516.7
M2_19
516.0
M2_20
515.1
M2_21
514.8
M2_22
512.9
M2_23
512.4
M2_24
512.0
M2_25
511.8
M2_26
503.8
M2_27
503.7
M2_28
501.2
M2_29
501.0
M2_30
498.9
M2_31
498.5
M2_32
497.4
M2_33
494.6
M2_34
491.8
M2_35
488.4
M2_36
486.6
M2_37
484.7
M2_38
482.5
M2_39
480.9
M2_40
477.7
M2_41
475.9
M2_42
475.8
M2_43
472.7
M2_44
470.4
M2_45
469.1
M2_46
466.4
M2_47
466.0
M2_48
465.5
M2_49
463.9
M2_50
463.0
M2_51
461.2
M2_52
459.8
M2_53
455.0
M2_54
452.2
M2_55
451.7
M2_56
449.5
M2_57
443.2
M2_58
440.9
M2_59
439.2
M2_60
434.2
M2_61
433.2
M2_62
429.1
M2_63
428.8
M2_64
426.8
M2_65
426.3
M2_66
424.0
M2_67
422.7
M2_68
422.7
M2_69
422.3
M2_70
419.8
M2_71
413.4
M2_72
410.3
M2_73
409.5
M2_74
404.6
M2_75
401.6
M2_76
399.9
M2_77
398.0
M2_78
394.4
M2_79
394.0
M2_80
392.6
M2_81
389.6
M2_82
376.6
M2_83
372.0
M2_84
371.6
M2_85
371.2
M2_86
363.7
M2_87
357.5
M2_88
346.4
M2_89
343.2
M2_90
343.1
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