BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.0 nTPM
HPA Brain:207.1 nTPM
GTEx:135.0 nTPM
FANTOM5:89.8 Scaled Tags Per Million
Mouse:32.3 nTPM
Rat:23.0 nTPM
Pig:68.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 207.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.1
2828 Female, age 72, unknown 236.8
2586 Male, age 75, left hemisphere 204.2
1827 Male, age 72, unknown 178.8
2666 Male, age 74, left hemisphere 149.3
1833 Male, age 53, unknown 146.6
1870 Female, age 42, unknown 142.9
2411 Female, age 72, unknown 136.1
1830 Male, age 51, unknown 123.0
2019 Male, age 18, unknown 106.1
2219 Male, age 76, both hemispheres 96.8
Dorsal raphe nucleus
nTPM: 179.8
2016 Female, age 72, unknown 208.8
2298 Female, age 72, unknown 192.9
1828 Male, age 53, unknown 191.8
2047 Male, age 72, unknown 180.4
2750 Male, age 76, both hemispheres 125.3
Inferior colliculus
nTPM: 207.1
2849 Male, age 72, unknown 232.9
1848 Female, age 42, unknown 213.2
1890 Male, age 53, unknown 193.2
2097 Female, age 72, unknown 189.2
Median raphe nucleus
nTPM: 124.8
2220 Male, age 76, midline 124.8
Periaquaductal grey, anterior
nTPM: 176.6
1795 Male, age 51, unknown 196.2
2502 Female, age 75, unknown 187.6
1947 Male, age 18, unknown 146.1
Periaquaductal grey, dorsal
nTPM: 201.0
1840 Male, age 53, unknown 240.2
2464 Female, age 72, unknown 200.3
2850 Male, age 76, both hemispheres 200.3
1831 Male, age 72, unknown 163.1
Periaquaductal grey, lateral
nTPM: 204.2
2140 Male, age 76, both hemispheres 226.9
2053 Male, age 18, unknown 225.4
2272 Male, age 74, both hemispheres 160.2
Pretectal area
nTPM: 159.5
2667 Female, age 75, unknown 204.4
2825 Male, age 18, unknown 202.0
2273 Male, age 74, both hemispheres 170.9
1944 Female, age 72, unknown 166.6
1816 Male, age 51, unknown 165.3
2316 Male, age 76, right hemisphere 161.4
1817 Female, age 42, unknown 153.3
2224 Female, age 72, unknown 150.3
1815 Male, age 53, unknown 137.7
2407 Male, age 75, both hemispheres 135.7
2007 Male, age 72, unknown 106.6
Red nucleus
nTPM: 154.5
2227 Male, age 72, unknown 181.0
2769 Male, age 72, unknown 179.5
2503 Female, age 72, unknown 177.7
1954 Female, age 42, unknown 173.9
2588 Male, age 74, left hemisphere 172.4
2823 Male, age 76, right hemisphere 157.6
2725 Female, age 75, unknown 153.6
1821 Female, age 72, unknown 150.5
1904 Male, age 53, unknown 146.4
1865 Male, age 51, unknown 135.6
2584 Male, age 75, left hemisphere 122.3
2785 Male, age 18, unknown 103.6
Substantia nigra
nTPM: 161.0
2699 Male, age 18, unknown 256.3
1916 Female, age 42, unknown 194.8
1851 Male, age 51, unknown 166.0
2665 Male, age 74, both hemispheres 163.8
2409 Female, age 72, unknown 154.5
1889 Female, age 72, unknown 147.7
2241 Male, age 72, unknown 143.2
2583 Male, age 75, right hemisphere 133.3
1941 Male, age 53, unknown 129.6
2590 Female, age 75, unknown 121.1
Superior colliculus
nTPM: 162.2
2664 Male, age 75, both hemispheres 202.6
1796 Male, age 53, unknown 179.5
2087 Female, age 72, unknown 173.0
2261 Male, age 18, unknown 167.9
1839 Male, age 51, unknown 164.1
1995 Male, age 72, unknown 162.9
2668 Female, age 75, unknown 149.2
2587 Male, age 74, left hemisphere 147.0
1895 Male, age 76, right hemisphere 142.7
1913 Female, age 42, unknown 133.3
Ventral tegmental area
nTPM: 145.3
1915 Female, age 42, unknown 170.2
2021 Male, age 53, unknown 153.1
1942 Male, age 51, unknown 152.9
2410 Female, age 72, unknown 147.6
2218 Male, age 76, both hemispheres 133.7
2223 Female, age 72, unknown 114.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 135.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.0
Samples: 183

Max nTPM: 887.3
Min nTPM: 15.1
Std nTPM: 104.6
Median nTPM: 108.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 887.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 638.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 558.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 426.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 359.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 340.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 337.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 336.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 314.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 306.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 297.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.8
FF:10158-103A5 76 years, female 89.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.6
Samples: 3

Max nTPM: 66.2
Min nTPM: 49.3
Sample A Female 54.4
Sample B Female 66.2
Sample C Male 49.3
Midbrain
nTPM: 48.5
Samples: 3

Max nTPM: 52.9
Min nTPM: 43.5
Sample B Female 52.9
Sample C Male 49.2
Sample D Male 43.5
Periaqueductal gray
nTPM: 54.0
Samples: 3

Max nTPM: 58.8
Min nTPM: 47.3
Sample B Female 58.8
Sample C Male 56.0
Sample D Male 47.3
Superior colliculi
nTPM: 68.9
Samples: 4

Max nTPM: 110.7
Min nTPM: 48.4
Sample A Female 65.7
Sample B Female 110.7
Sample C Male 48.4
Sample D Male 50.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 34.3
Min nTPM: 30.6
Sample A 32.7
Sample B 34.3
Sample C 30.6
Sample D 31.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 23.0
Rat sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 23.7
Min nTPM: 22.6
Sample A 22.7
Sample A 23.7
Sample A 22.9
Sample A 22.6

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