MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:121.6 nTPM
GTEx:16.4 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:88.2 nTPM
Mouse:29.8 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.1
2586 Male, age 75, left hemisphere 109.8
2828 Female, age 72, unknown 88.8
2666 Male, age 74, left hemisphere 81.7
1827 Male, age 72, unknown 80.8
2219 Male, age 76, both hemispheres 77.7
1833 Male, age 53, unknown 74.2
1870 Female, age 42, unknown 71.3
1830 Male, age 51, unknown 68.9
2019 Male, age 18, unknown 68.9
2411 Female, age 72, unknown 58.5
Dorsal raphe nucleus
nTPM: 98.4
2016 Female, age 72, unknown 135.4
2298 Female, age 72, unknown 115.2
1828 Male, age 53, unknown 98.2
2047 Male, age 72, unknown 85.2
2750 Male, age 76, both hemispheres 57.9
Inferior colliculus
nTPM: 86.7
2849 Male, age 72, unknown 97.8
1890 Male, age 53, unknown 87.0
1848 Female, age 42, unknown 83.2
2097 Female, age 72, unknown 78.8
Median raphe nucleus
nTPM: 74.6
2220 Male, age 76, midline 74.6
Periaquaductal grey, anterior
nTPM: 99.0
1795 Male, age 51, unknown 105.2
2502 Female, age 75, unknown 103.1
1947 Male, age 18, unknown 88.8
Periaquaductal grey, dorsal
nTPM: 120.8
2850 Male, age 76, both hemispheres 168.5
1840 Male, age 53, unknown 122.7
1831 Male, age 72, unknown 113.1
2464 Female, age 72, unknown 79.1
Periaquaductal grey, lateral
nTPM: 121.6
2140 Male, age 76, both hemispheres 142.7
2272 Male, age 74, both hemispheres 115.0
2053 Male, age 18, unknown 107.1
Pretectal area
nTPM: 90.4
2273 Male, age 74, both hemispheres 115.1
2407 Male, age 75, both hemispheres 113.0
2224 Female, age 72, unknown 97.5
2825 Male, age 18, unknown 94.7
1816 Male, age 51, unknown 91.3
2667 Female, age 75, unknown 88.9
1815 Male, age 53, unknown 85.2
1944 Female, age 72, unknown 82.0
1817 Female, age 42, unknown 81.9
2007 Male, age 72, unknown 74.4
2316 Male, age 76, right hemisphere 70.7
Red nucleus
nTPM: 72.7
2584 Male, age 75, left hemisphere 89.2
1865 Male, age 51, unknown 74.1
2785 Male, age 18, unknown 74.1
2769 Male, age 72, unknown 73.7
1821 Female, age 72, unknown 73.4
2725 Female, age 75, unknown 73.2
2503 Female, age 72, unknown 73.0
2227 Male, age 72, unknown 72.8
1954 Female, age 42, unknown 70.4
1904 Male, age 53, unknown 69.9
2588 Male, age 74, left hemisphere 68.2
2823 Male, age 76, right hemisphere 60.3
Substantia nigra
nTPM: 88.6
2699 Male, age 18, unknown 111.9
2665 Male, age 74, both hemispheres 105.3
2583 Male, age 75, right hemisphere 97.9
2590 Female, age 75, unknown 94.5
1851 Male, age 51, unknown 88.4
1916 Female, age 42, unknown 85.2
2241 Male, age 72, unknown 78.8
1941 Male, age 53, unknown 76.8
1889 Female, age 72, unknown 75.2
2409 Female, age 72, unknown 71.9
Superior colliculus
nTPM: 91.1
2664 Male, age 75, both hemispheres 135.5
1995 Male, age 72, unknown 112.7
2587 Male, age 74, left hemisphere 91.9
2261 Male, age 18, unknown 90.4
1796 Male, age 53, unknown 87.6
2087 Female, age 72, unknown 84.7
1839 Male, age 51, unknown 84.0
1913 Female, age 42, unknown 84.0
2668 Female, age 75, unknown 78.9
1895 Male, age 76, right hemisphere 60.9
Ventral tegmental area
nTPM: 82.7
2021 Male, age 53, unknown 98.3
1942 Male, age 51, unknown 87.2
1915 Female, age 42, unknown 81.4
2410 Female, age 72, unknown 78.0
2218 Male, age 76, both hemispheres 76.6
2223 Female, age 72, unknown 74.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 183

Max nTPM: 36.1
Min nTPM: 9.3
Std nTPM: 4.3
Median nTPM: 15.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 36.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 29.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 27.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 25.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 25.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 25.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 24.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.5
FF:10158-103A5 76 years, female 62.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.4
Samples: 4

Max nTPM: 85.7
Min nTPM: 70.1
Sample A Female 75.1
Sample B Female 70.1
Sample C Male 74.6
Sample D Male 85.7
Midbrain
nTPM: 83.3
Samples: 4

Max nTPM: 122.8
Min nTPM: 66.5
Sample A Female 122.8
Sample B Female 76.2
Sample C Male 66.5
Sample D Male 67.6
Periaqueductal gray
nTPM: 88.2
Samples: 3

Max nTPM: 90.0
Min nTPM: 86.4
Sample B Female 88.2
Sample C Male 90.0
Sample D Male 86.4
Superior colliculi
nTPM: 68.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 61.0
Sample A Female 66.5
Sample B Female 66.0
Sample C Male 61.0
Sample D Male 78.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 27.1
Sample A Male 27.1
Sample B Male 30.8
Sample C Female 31.4
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69735024 Antisense, RP_050503_01_H07, Mouse strain C57BL/6J (56 days, male) 4.3
73834547 Antisense, RP_051212_04_B05, Mouse strain C57BL/6J (56 days, male) 0.2

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