MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:61.7 nTPM
GTEx:31.3 nTPM
FANTOM5:23.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.1
2586 Male, age 75, left hemisphere 63.6
2666 Male, age 74, left hemisphere 61.8
2219 Male, age 76, both hemispheres 57.4
2828 Female, age 72, unknown 55.5
1833 Male, age 53, unknown 53.9
2019 Male, age 18, unknown 50.8
1870 Female, age 42, unknown 50.2
2411 Female, age 72, unknown 49.7
1830 Male, age 51, unknown 49.2
1827 Male, age 72, unknown 48.6
Dorsal raphe nucleus
nTPM: 49.3
1828 Male, age 53, unknown 53.7
2750 Male, age 76, both hemispheres 53.3
2016 Female, age 72, unknown 50.9
2298 Female, age 72, unknown 46.3
2047 Male, age 72, unknown 42.0
Inferior colliculus
nTPM: 49.9
2849 Male, age 72, unknown 54.8
1890 Male, age 53, unknown 52.4
1848 Female, age 42, unknown 50.1
2097 Female, age 72, unknown 42.5
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 48.1
2502 Female, age 75, unknown 55.8
1795 Male, age 51, unknown 46.6
1947 Male, age 18, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 50.5
2850 Male, age 76, both hemispheres 56.2
1840 Male, age 53, unknown 51.8
2464 Female, age 72, unknown 48.8
1831 Male, age 72, unknown 45.2
Periaquaductal grey, lateral
nTPM: 46.9
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 49.4
2272 Male, age 74, both hemispheres 36.9
Pretectal area
nTPM: 51.1
1817 Female, age 42, unknown 59.2
1944 Female, age 72, unknown 55.7
1815 Male, age 53, unknown 55.2
2007 Male, age 72, unknown 54.3
1816 Male, age 51, unknown 53.6
2316 Male, age 76, right hemisphere 52.7
2825 Male, age 18, unknown 51.2
2407 Male, age 75, both hemispheres 50.2
2224 Female, age 72, unknown 49.5
2667 Female, age 75, unknown 44.7
2273 Male, age 74, both hemispheres 36.3
Red nucleus
nTPM: 55.3
2503 Female, age 72, unknown 62.5
2725 Female, age 75, unknown 60.2
2588 Male, age 74, left hemisphere 58.0
2785 Male, age 18, unknown 57.6
1865 Male, age 51, unknown 56.1
2769 Male, age 72, unknown 54.7
1904 Male, age 53, unknown 53.8
1954 Female, age 42, unknown 53.6
1821 Female, age 72, unknown 52.2
2584 Male, age 75, left hemisphere 52.2
2227 Male, age 72, unknown 52.1
2823 Male, age 76, right hemisphere 51.0
Substantia nigra
nTPM: 61.7
2241 Male, age 72, unknown 75.1
2699 Male, age 18, unknown 74.6
2409 Female, age 72, unknown 68.7
2665 Male, age 74, both hemispheres 68.2
1916 Female, age 42, unknown 67.9
1851 Male, age 51, unknown 62.8
1941 Male, age 53, unknown 52.9
1889 Female, age 72, unknown 52.3
2590 Female, age 75, unknown 47.5
2583 Male, age 75, right hemisphere 46.9
Superior colliculus
nTPM: 52.4
2587 Male, age 74, left hemisphere 61.4
2668 Female, age 75, unknown 59.5
1839 Male, age 51, unknown 55.6
1995 Male, age 72, unknown 55.1
1796 Male, age 53, unknown 52.6
2087 Female, age 72, unknown 52.3
1913 Female, age 42, unknown 49.5
1895 Male, age 76, right hemisphere 47.9
2261 Male, age 18, unknown 45.6
2664 Male, age 75, both hemispheres 44.3
Ventral tegmental area
nTPM: 54.0
1915 Female, age 42, unknown 59.9
2410 Female, age 72, unknown 56.7
2223 Female, age 72, unknown 54.0
2218 Male, age 76, both hemispheres 53.1
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 48.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 183

Max nTPM: 52.2
Min nTPM: 13.9
Std nTPM: 5.7
Median nTPM: 31.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 52.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 50.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 47.9
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 47.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 47.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 45.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 43.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 41.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 40.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 40.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

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