BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.8 nTPM
HPA Brain:219.5 nTPM
GTEx:107.8 nTPM
FANTOM5:136.2 Scaled Tags Per Million
Macaque:337.6 nTPM
Mouse:137.0 nTPM
Rat:116.5 nTPM
Pig:285.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 219.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 164.4
2019 Male, age 18, unknown 248.3
1827 Male, age 72, unknown 177.8
2219 Male, age 76, both hemispheres 175.9
2411 Female, age 72, unknown 171.9
2666 Male, age 74, left hemisphere 155.7
1870 Female, age 42, unknown 146.0
1833 Male, age 53, unknown 144.4
2586 Male, age 75, left hemisphere 144.0
1830 Male, age 51, unknown 141.7
2828 Female, age 72, unknown 138.1
Dorsal raphe nucleus
nTPM: 147.1
2298 Female, age 72, unknown 173.6
2750 Male, age 76, both hemispheres 152.9
2047 Male, age 72, unknown 149.3
1828 Male, age 53, unknown 144.1
2016 Female, age 72, unknown 115.6
Inferior colliculus
nTPM: 182.7
2097 Female, age 72, unknown 204.7
1890 Male, age 53, unknown 188.6
1848 Female, age 42, unknown 178.7
2849 Male, age 72, unknown 158.7
Median raphe nucleus
nTPM: 159.6
2220 Male, age 76, midline 159.6
Periaquaductal grey, anterior
nTPM: 167.9
2502 Female, age 75, unknown 204.3
1795 Male, age 51, unknown 155.8
1947 Male, age 18, unknown 143.5
Periaquaductal grey, dorsal
nTPM: 131.9
2850 Male, age 76, both hemispheres 147.7
1840 Male, age 53, unknown 129.2
2464 Female, age 72, unknown 125.9
1831 Male, age 72, unknown 124.8
Periaquaductal grey, lateral
nTPM: 152.3
2272 Male, age 74, both hemispheres 190.0
2140 Male, age 76, both hemispheres 136.5
2053 Male, age 18, unknown 130.5
Pretectal area
nTPM: 196.0
2007 Male, age 72, unknown 271.2
1816 Male, age 51, unknown 264.0
1817 Female, age 42, unknown 261.7
1944 Female, age 72, unknown 229.5
1815 Male, age 53, unknown 209.6
2273 Male, age 74, both hemispheres 186.8
2407 Male, age 75, both hemispheres 175.8
2667 Female, age 75, unknown 167.5
2825 Male, age 18, unknown 137.0
2224 Female, age 72, unknown 130.3
2316 Male, age 76, right hemisphere 122.8
Red nucleus
nTPM: 178.7
2785 Male, age 18, unknown 234.4
1821 Female, age 72, unknown 232.8
1865 Male, age 51, unknown 181.3
2588 Male, age 74, left hemisphere 179.7
1904 Male, age 53, unknown 177.1
1954 Female, age 42, unknown 176.3
2725 Female, age 75, unknown 175.5
2584 Male, age 75, left hemisphere 174.1
2769 Male, age 72, unknown 157.6
2227 Male, age 72, unknown 155.3
2503 Female, age 72, unknown 154.0
2823 Male, age 76, right hemisphere 145.9
Substantia nigra
nTPM: 219.5
1941 Male, age 53, unknown 291.0
1916 Female, age 42, unknown 290.0
1851 Male, age 51, unknown 237.1
2241 Male, age 72, unknown 232.8
1889 Female, age 72, unknown 225.5
2665 Male, age 74, both hemispheres 199.0
2409 Female, age 72, unknown 196.0
2583 Male, age 75, right hemisphere 181.7
2590 Female, age 75, unknown 179.9
2699 Male, age 18, unknown 162.1
Superior colliculus
nTPM: 169.2
2087 Female, age 72, unknown 203.3
2261 Male, age 18, unknown 200.7
2587 Male, age 74, left hemisphere 189.7
2668 Female, age 75, unknown 185.2
1796 Male, age 53, unknown 175.9
1895 Male, age 76, right hemisphere 160.6
1913 Female, age 42, unknown 151.3
1995 Male, age 72, unknown 148.3
1839 Male, age 51, unknown 145.0
2664 Male, age 75, both hemispheres 131.8
Ventral tegmental area
nTPM: 180.7
2410 Female, age 72, unknown 231.3
1915 Female, age 42, unknown 200.4
2218 Male, age 76, both hemispheres 185.0
2223 Female, age 72, unknown 183.6
1942 Male, age 51, unknown 158.2
2021 Male, age 53, unknown 125.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 107.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.8
Samples: 183

Max nTPM: 540.6
Min nTPM: 25.6
Std nTPM: 57.4
Median nTPM: 95.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 540.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 329.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 304.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 268.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 249.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 227.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 214.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 208.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 208.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 204.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 203.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.2
FF:10158-103A5 76 years, female 136.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 337.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 129.3
Samples: 1

Max nTPM: 129.3
Min nTPM: 129.3
Sample A 129.3
Midbrain
nTPM: 184.1
Samples: 1

Max nTPM: 184.1
Min nTPM: 184.1
Sample A 184.1
Superior colliculi
nTPM: 337.6
Samples: 1

Max nTPM: 337.6
Min nTPM: 337.6
Sample A 337.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 285.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 193.5
Samples: 3

Max nTPM: 251.8
Min nTPM: 131.8
Sample A Female 251.8
Sample B Female 131.8
Sample C Male 196.8
Midbrain
nTPM: 277.7
Samples: 3

Max nTPM: 386.0
Min nTPM: 133.0
Sample B Female 133.0
Sample C Male 386.0
Sample D Male 314.1
Periaqueductal gray
nTPM: 139.8
Samples: 3

Max nTPM: 173.4
Min nTPM: 121.7
Sample B Female 121.7
Sample C Male 173.4
Sample D Male 124.3
Superior colliculi
nTPM: 285.7
Samples: 4

Max nTPM: 359.7
Min nTPM: 195.1
Sample A Female 324.0
Sample B Female 195.1
Sample C Male 359.7
Sample D Male 264.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.0
Samples: 4

Max nTPM: 145.6
Min nTPM: 123.0
Sample A 123.0
Sample B 145.6
Sample C 141.4
Sample D 137.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 116.5
Rat sample Sample description nTPM
Midbrain
nTPM: 116.4
Samples: 4

Max nTPM: 119.6
Min nTPM: 112.1
Sample A 119.1
Sample A 115.0
Sample A 119.6
Sample A 112.1

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