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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:34.8 nTPM
HPA Brain:202.7 nTPM
GTEx:34.8 nTPM
FANTOM5:185.4 Scaled Tags Per Million
Pig:134.4 nTPM
Mouse:83.3 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.7
Sample id Sample description nTPM
Amygdala
nTPM: 202.7
2814 Male, age 76, right hemisphere 247.7
2514 Male, age 75, right hemisphere 233.2
2517 Female, age 94, left hemisphere 191.0
1987 Female, age 91, left hemisphere 171.4
2695 Female, age 67, right hemisphere 170.3
Basal amygdala
nTPM: 163.0
1955 Male, age 76, both hemispheres 194.1
2110 Male, age 80, left hemisphere 168.4
2609 Male, age 75, right hemisphere 165.4
2685 Female, age 94, left hemisphere 163.5
2827 Female, age 67, right hemisphere 143.5
2243 Female, age 91, right hemisphere 142.9
Central amygdala
nTPM: 175.8
1905 Male, age 76, both hemispheres 249.2
2701 Female, age 91, right hemisphere 172.1
2239 Male, age 80, left hemisphere 168.9
2515 Male, age 75, right hemisphere 156.3
2826 Female, age 94, left hemisphere 132.4
Corticomedial amygdala
nTPM: 164.5
2240 Male, age 76, both hemispheres 198.4
2429 Female, age 94, left hemisphere 188.5
2428 Male, age 75, right hemisphere 180.6
2829 Male, age 80, left hemisphere 157.5
2535 Female, age 67, right hemisphere 140.5
2242 Female, age 91, right hemisphere 121.4
Lateral amygdala
nTPM: 182.4
1883 Male, age 76, both hemispheres 228.6
2516 Male, age 75, right hemisphere 228.4
2255 Female, age 91, right hemisphere 165.2
2830 Female, age 67, right hemisphere 161.5
2534 Female, age 94, left hemisphere 160.4
2256 Male, age 80, left hemisphere 150.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 34.8
Samples: 181

Max nTPM: 60.7
Min nTPM: 8.9
Std nTPM: 7.7
Median nTPM: 34.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 60.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 55.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 55.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 54.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 52.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 49.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 49.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 47.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 46.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 46.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 46.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 45.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 44.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 44.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 43.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 43.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 43.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 43.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 42.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 42.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 42.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 41.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 41.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 40.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 40.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 40.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 39.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 39.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 39.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 39.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 39.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 39.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 38.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 38.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 38.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 38.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 37.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 37.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 37.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 37.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 37.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 37.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 37.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 37.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 37.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 37.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 36.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 36.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 36.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 36.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 36.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 36.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 36.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 36.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 36.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 35.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 35.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 35.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 35.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 35.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 35.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 35.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 35.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 35.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 35.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 34.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 34.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 34.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 34.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 34.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 34.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 34.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 34.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 34.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 34.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 34.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 34.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 33.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 33.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 33.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 33.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 33.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 33.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 33.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 33.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 33.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 33.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 33.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 33.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 33.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 33.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 33.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 33.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 33.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 32.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 32.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 32.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 32.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 32.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 32.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 32.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 32.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 31.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 31.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 31.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 31.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 31.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 31.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 31.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 31.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 30.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 30.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 30.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 30.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 30.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 30.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 30.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 30.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 30.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 30.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 30.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 30.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 29.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 29.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 29.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 29.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 28.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 28.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 28.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 28.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 27.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 27.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 27.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 27.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 27.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 26.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 26.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 26.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 26.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 26.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 26.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 25.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 24.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 24.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 24.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 23.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 22.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 22.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 22.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 21.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 21.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 21.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 21.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 20.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 18.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 18.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.4
FF:10151-102I7 76 years, female 185.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.4
Pig sample Sample description nTPM
Amygdala
nTPM: 134.4
Samples: 4

Max nTPM: 149.3
Min nTPM: 119.8
Sample A Female 149.3
Sample B Female 146.1
Sample C Male 119.8
Sample D Male 122.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 83.3
Samples: 4

Max nTPM: 84.8
Min nTPM: 80.3
Sample A Male 83.4
Sample B Male 80.3
Sample C Female 84.7
Sample D Female 84.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.8
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 4.7
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 0.9

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