BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA Brain:37.5 nTPM
GTEx:20.1 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Macaque:99.1 nTPM
Mouse:19.6 nTPM
Rat:44.2 nTPM
Pig:48.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
2019 Male, age 18, unknown 36.6
2219 Male, age 76, both hemispheres 32.2
1827 Male, age 72, unknown 23.3
2828 Female, age 72, unknown 20.7
1833 Male, age 53, unknown 20.0
2586 Male, age 75, left hemisphere 18.4
1830 Male, age 51, unknown 15.1
2411 Female, age 72, unknown 14.7
1870 Female, age 42, unknown 10.9
2666 Male, age 74, left hemisphere 5.2
Dorsal raphe nucleus
nTPM: 11.5
2298 Female, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 11.2
2047 Male, age 72, unknown 9.7
1828 Male, age 53, unknown 7.0
2016 Female, age 72, unknown 5.4
Inferior colliculus
nTPM: 28.2
2097 Female, age 72, unknown 39.6
1848 Female, age 42, unknown 35.1
2849 Male, age 72, unknown 19.9
1890 Male, age 53, unknown 18.0
Median raphe nucleus
nTPM: 14.8
2220 Male, age 76, midline 14.8
Periaquaductal grey, anterior
nTPM: 19.5
2502 Female, age 75, unknown 34.3
1795 Male, age 51, unknown 13.2
1947 Male, age 18, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 22.7
1840 Male, age 53, unknown 30.4
2464 Female, age 72, unknown 25.6
1831 Male, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 16.5
Periaquaductal grey, lateral
nTPM: 13.6
2140 Male, age 76, both hemispheres 16.8
2053 Male, age 18, unknown 16.1
2272 Male, age 74, both hemispheres 7.8
Pretectal area
nTPM: 37.5
1816 Male, age 51, unknown 90.9
1815 Male, age 53, unknown 61.1
1817 Female, age 42, unknown 58.4
2007 Male, age 72, unknown 46.4
1944 Female, age 72, unknown 41.8
2224 Female, age 72, unknown 30.5
2316 Male, age 76, right hemisphere 28.1
2667 Female, age 75, unknown 20.4
2407 Male, age 75, both hemispheres 15.3
2825 Male, age 18, unknown 12.1
2273 Male, age 74, both hemispheres 7.3
Red nucleus
nTPM: 33.6
2503 Female, age 72, unknown 78.9
2823 Male, age 76, right hemisphere 52.8
1954 Female, age 42, unknown 41.1
1904 Male, age 53, unknown 38.8
2785 Male, age 18, unknown 33.3
1821 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 31.3
2227 Male, age 72, unknown 27.0
2769 Male, age 72, unknown 26.5
2588 Male, age 74, left hemisphere 18.5
2725 Female, age 75, unknown 14.5
2584 Male, age 75, left hemisphere 9.0
Substantia nigra
nTPM: 14.8
1889 Female, age 72, unknown 46.4
2590 Female, age 75, unknown 24.0
2665 Male, age 74, both hemispheres 13.5
2409 Female, age 72, unknown 12.2
1916 Female, age 42, unknown 10.8
1851 Male, age 51, unknown 10.2
2241 Male, age 72, unknown 9.6
2699 Male, age 18, unknown 7.8
1941 Male, age 53, unknown 7.3
2583 Male, age 75, right hemisphere 6.7
Superior colliculus
nTPM: 30.9
2087 Female, age 72, unknown 69.6
2261 Male, age 18, unknown 50.0
1895 Male, age 76, right hemisphere 41.4
1995 Male, age 72, unknown 32.4
1796 Male, age 53, unknown 31.7
1913 Female, age 42, unknown 27.7
2668 Female, age 75, unknown 19.9
1839 Male, age 51, unknown 15.7
2664 Male, age 75, both hemispheres 13.4
2587 Male, age 74, left hemisphere 7.0
Ventral tegmental area
nTPM: 14.8
2410 Female, age 72, unknown 28.7
2218 Male, age 76, both hemispheres 14.8
1915 Female, age 42, unknown 12.5
1942 Male, age 51, unknown 12.2
2223 Female, age 72, unknown 11.8
2021 Male, age 53, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.1
Samples: 183

Max nTPM: 388.3
Min nTPM: 0.4
Std nTPM: 35.9
Median nTPM: 11.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 388.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 230.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 107.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 101.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 92.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 81.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 74.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 57.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 55.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 54.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 99.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 1

Max nTPM: 50.6
Min nTPM: 50.6
Sample A 50.6
Midbrain
nTPM: 57.3
Samples: 1

Max nTPM: 57.3
Min nTPM: 57.3
Sample A 57.3
Superior colliculi
nTPM: 99.1
Samples: 1

Max nTPM: 99.1
Min nTPM: 99.1
Sample A 99.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 3

Max nTPM: 18.0
Min nTPM: 6.4
Sample A Female 18.0
Sample B Female 15.9
Sample C Male 6.4
Midbrain
nTPM: 48.1
Samples: 3

Max nTPM: 62.1
Min nTPM: 24.2
Sample B Female 24.2
Sample C Male 62.1
Sample D Male 58.1
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 18.7
Min nTPM: 13.9
Sample B Female 13.9
Sample C Male 18.2
Sample D Male 18.7
Superior colliculi
nTPM: 37.4
Samples: 4

Max nTPM: 58.4
Min nTPM: 20.7
Sample A Female 58.4
Sample B Female 20.7
Sample C Male 30.8
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 20.0
Min nTPM: 19.1
Sample A 20.0
Sample B 19.1
Sample C 19.5
Sample D 19.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 44.2
Rat sample Sample description nTPM
Midbrain
nTPM: 44.2
Samples: 4

Max nTPM: 49.9
Min nTPM: 36.3
Sample A 45.0
Sample A 49.9
Sample A 45.7
Sample A 36.3

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