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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:288.4 nTPM
GTEx:288.4 nTPM
FANTOM5:22.2 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 288.4
Samples: 105

Max nTPM: 1433.0
Min nTPM: 9.5
Std nTPM: 277.1
Median nTPM:
491_1 89 years, female 1433.0
265_1 87 years, male 1018.7
32_1 67 years, male 902.1
347_1 72 years, male 863.1
177_1 74 years, male 743.1
480_1 63 years, male 719.9
406_1 79 years, male 697.8
495_1 57 years, female 654.4
356_1 87 years, female 618.8
413_1 59 years, female 584.0
466_1 57 years, female 550.5
153_1 70 years, female 545.6
315_1 62 years, female 538.0
501_1 88 years, male 533.2
389_1 86 years, female 531.7
379_1 60 years, male 513.2
126_1 63 years, male 508.3
217_1 76 years, male 507.8
415_1 77 years, female 507.4
162_1 79 years, female 505.9
35_1 74 years, female 500.8
189_1 76 years, male 497.5
396_1 62 years, male 495.3
81_1 67 years, male 477.4
452_1 88 years, female 475.7
4_1 88 years, female 464.7
375_1 74 years, female 461.3
499_1 55 years, female 447.8
18_1 88 years, male 447.7
386_1 76 years, male 446.1
518_1 75 years, female 443.3
6_1 73 years, female 438.8
42_1 85 years, male 437.1
447_1 81 years, male 434.7
119_1 70 years, female 433.9
314_1 67 years, male 430.2
394_1 75 years, female 423.8
348_1 84 years, male 420.5
41_1 94 years, female 416.4
117_1 61 years, male 416.3
266_1 85 years, male 404.9
173_1 67 years, male 403.3
251_1 78 years, male 401.2
354_1 81 years, female 399.7
376_1 75 years, female 398.5
335_1 73 years, female 386.8
286_1 68 years, female 386.4
264_1 73 years, female 386.3
319_1 81 years, male 373.7
351_1 91 years, male 372.3
352_1 62 years, male 371.9
316_1 62 years, male 369.1
317_1 60 years, male 366.1
517_1 88 years, male 362.9
295_1 61 years, female 354.2
9_1 66 years, female 326.5
350_1 84 years, female 322.8
293_1 68 years, female 321.8
506_1 65 years, male 300.1
218_1 71 years, female 27.6
414_1 84 years, female 25.5
308_1 70 years, female 24.9
503_1 68 years, male 23.0
490_1 67 years, female 22.9
311_1 78 years, male 22.2
384_1 83 years, male 22.0
17_1 71 years, male 21.8
321_1 62 years, female 21.7
307_1 66 years, female 21.3
322_1 76 years, male 21.2
246_1 77 years, male 20.7
404_1 82 years, female 19.3
349_1 83 years, male 19.2
292_1 71 years, male 18.9
139_1 64 years, female 18.0
288_1 66 years, female 17.9
229_1 69 years, female 17.4
313_1 79 years, female 17.4
237_1 82 years, male 16.8
405_1 91 years, male 16.8
377_1 82 years, female 16.7
425_1 59 years, female 16.7
145_1 84 years, male 16.2
468_1 89 years, male 16.2
243_1 75 years, male 16.1
353_1 82 years, female 16.0
324_1 76 years, male 15.8
109_1 81 years, female 15.7
355_1 70 years, female 15.7
2_1 77 years, female 15.2
115_1 83 years, male 15.2
526_1 61 years, male 15.0
43_1 64 years, female 14.7
120_1 70 years, female 14.6
89_1 63 years, male 13.6
142_1 61 years, female 13.3
320_1 89 years, female 12.9
318_1 68 years, male 12.6
99_1 64 years, male 12.0
163_1 78 years, male 11.6
137_1 83 years, male 11.4
291_1 76 years, male 10.7
254_1 77 years, female 10.2
149_1 88 years, male 10.1
172_1 72 years, female 9.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 22.2
FF:10030-101E3 24-65 years, mixed 22.2

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