A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.5
nTPM
Monaco:
172.1
nTPM
Schmiedel:
45.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
HPA sample
nTPM
Classical monocyte nTPM: 45.4
Samples: 6
Max nTPM: 75.0
Min nTPM: 33.5
P10809_1003
75.0
P10809_1020
36.8
P10809_1039
36.8
P10809_1058
33.5
P10809_1080
53.7
P10809_1107
36.8
Intermediate monocyte nTPM: 33.1
Samples: 6
Max nTPM: 48.8
Min nTPM: 24.4
P10809_1004
48.8
P10809_1023
30.0
P10809_1042
35.4
P10809_1061
34.6
P10809_1081
25.6
P10809_1108
24.4
Non-classical monocyte nTPM: 26.2
Samples: 5
Max nTPM: 33.9
Min nTPM: 13.8
P10809_1005
31.3
P10809_1053
33.0
P10809_1072
33.9
P10809_1082
13.8
P10809_1109
19.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.1
Monaco sample
nTPM
Classical monocyte nTPM: 172.2
Samples: 4
Max nTPM: 202.2
Min nTPM: 112.9
RHH5313_R3680
185.7
RHH5221_R3593
202.2
RHH5250_R3622
187.8
RHH5279_R3651
112.9
Intermediate monocyte nTPM: 97.0
Samples: 4
Max nTPM: 143.9
Min nTPM: 75.7
RHH5314_R3681
81.1
RHH5222_R3594
143.9
RHH5251_R3623
87.1
RHH5280_R3652
75.7
Non-classical monocyte nTPM: 83.0
Samples: 4
Max nTPM: 103.9
Min nTPM: 66.7
RHH5315_R3682
91.5
RHH5223_R3595
103.9
RHH5252_R3624
69.8
RHH5281_R3653
66.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.4
Schmiedel sample id
TPM
Classical monocyte TPM: 45.4
Samples: 91
Max TPM: 60.5
Min TPM: 33.6
MONOCYTES_1
60.5
MONOCYTES_2
59.2
MONOCYTES_3
58.9
MONOCYTES_4
58.2
MONOCYTES_5
57.2
MONOCYTES_6
56.3
MONOCYTES_7
54.0
MONOCYTES_8
53.7
MONOCYTES_9
53.3
MONOCYTES_10
52.4
MONOCYTES_11
51.8
MONOCYTES_12
51.5
MONOCYTES_13
51.2
MONOCYTES_14
50.8
MONOCYTES_15
50.0
MONOCYTES_16
49.3
MONOCYTES_17
49.2
MONOCYTES_18
49.0
MONOCYTES_19
49.0
MONOCYTES_20
48.9
MONOCYTES_21
48.5
MONOCYTES_22
48.4
MONOCYTES_23
48.3
MONOCYTES_24
48.1
MONOCYTES_25
48.1
MONOCYTES_26
47.8
MONOCYTES_27
47.8
MONOCYTES_28
47.6
MONOCYTES_29
47.2
MONOCYTES_30
47.0
MONOCYTES_31
46.9
MONOCYTES_32
46.0
MONOCYTES_33
46.0
MONOCYTES_34
45.9
MONOCYTES_35
45.8
MONOCYTES_36
45.7
MONOCYTES_37
45.5
MONOCYTES_38
45.5
MONOCYTES_39
45.5
MONOCYTES_40
45.5
MONOCYTES_41
45.4
MONOCYTES_42
45.3
MONOCYTES_43
45.2
MONOCYTES_44
45.1
MONOCYTES_45
45.0
MONOCYTES_46
44.9
MONOCYTES_47
44.7
MONOCYTES_48
44.4
MONOCYTES_49
44.2
MONOCYTES_50
44.2
MONOCYTES_51
43.9
MONOCYTES_52
43.9
MONOCYTES_53
43.6
MONOCYTES_54
43.5
MONOCYTES_55
43.3
MONOCYTES_56
43.3
MONOCYTES_57
43.0
MONOCYTES_58
43.0
MONOCYTES_59
42.9
MONOCYTES_60
42.9
MONOCYTES_61
42.8
MONOCYTES_62
42.7
MONOCYTES_63
42.7
MONOCYTES_64
42.6
MONOCYTES_65
42.5
MONOCYTES_66
42.4
MONOCYTES_67
42.1
MONOCYTES_68
41.9
MONOCYTES_69
41.9
MONOCYTES_70
41.7
MONOCYTES_71
41.6
MONOCYTES_72
41.5
MONOCYTES_73
41.3
MONOCYTES_74
41.0
MONOCYTES_75
40.9
MONOCYTES_76
40.8
MONOCYTES_77
40.8
MONOCYTES_78
40.5
MONOCYTES_79
40.1
MONOCYTES_80
40.1
MONOCYTES_81
39.7
MONOCYTES_82
39.5
MONOCYTES_83
39.5
MONOCYTES_84
39.5
MONOCYTES_85
39.3
MONOCYTES_86
38.5
MONOCYTES_87
37.3
MONOCYTES_88
37.0
MONOCYTES_89
36.8
MONOCYTES_90
35.6
MONOCYTES_91
33.6
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Non-classical monocyte TPM: 23.4
Samples: 90
Max TPM: 38.7
Min TPM: 11.9
M2_1
38.7
M2_2
34.8
M2_3
33.9
M2_4
31.8
M2_5
30.9
M2_6
30.1
M2_7
29.6
M2_8
29.2
M2_9
29.1
M2_10
28.3
M2_11
28.2
M2_12
27.3
M2_13
27.3
M2_14
26.6
M2_15
26.5
M2_16
26.5
M2_17
26.2
M2_18
26.0
M2_19
26.0
M2_20
26.0
M2_21
25.9
M2_22
25.9
M2_23
25.9
M2_24
25.6
M2_25
25.5
M2_26
25.3
M2_27
25.2
M2_28
25.1
M2_29
25.1
M2_30
25.1
M2_31
24.9
M2_32
24.7
M2_33
24.7
M2_34
24.6
M2_35
24.2
M2_36
24.0
M2_37
24.0
M2_38
23.9
M2_39
23.7
M2_40
23.5
M2_41
23.4
M2_42
23.4
M2_43
23.0
M2_44
22.9
M2_45
22.9
M2_46
22.8
M2_47
22.8
M2_48
22.7
M2_49
22.7
M2_50
22.5
M2_51
22.4
M2_52
22.3
M2_53
22.1
M2_54
22.1
M2_55
22.0
M2_56
22.0
M2_57
21.8
M2_58
21.6
M2_59
21.6
M2_60
21.5
M2_61
21.4
M2_62
21.3
M2_63
21.1
M2_64
21.0
M2_65
21.0
M2_66
20.8
M2_67
20.8
M2_68
20.5
M2_69
20.4
M2_70
20.2
M2_71
20.1
M2_72
20.0
M2_73
20.0
M2_74
19.9
M2_75
19.7
M2_76
19.7
M2_77
19.7
M2_78
19.3
M2_79
19.3
M2_80
19.1
M2_81
19.0
M2_82
18.9
M2_83
18.9
M2_84
18.7
M2_85
18.7
M2_86
18.6
M2_87
16.8
M2_88
15.7
M2_89
12.3
M2_90
11.9
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