A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.5
nTPM
Monaco:
49.8
nTPM
Schmiedel:
10.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.5
HPA sample
nTPM
Classical monocyte nTPM: 40.2
Samples: 6
Max nTPM: 53.7
Min nTPM: 29.1
P10809_1003
29.1
P10809_1020
53.7
P10809_1039
53.3
P10809_1058
34.1
P10809_1080
34.9
P10809_1107
36.3
Intermediate monocyte nTPM: 40.5
Samples: 6
Max nTPM: 51.5
Min nTPM: 28.2
P10809_1004
28.2
P10809_1023
44.4
P10809_1042
42.9
P10809_1061
51.5
P10809_1081
31.0
P10809_1108
45.2
Non-classical monocyte nTPM: 29.5
Samples: 5
Max nTPM: 51.6
Min nTPM: 18.3
P10809_1005
29.4
P10809_1053
51.6
P10809_1072
21.6
P10809_1082
18.3
P10809_1109
26.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.8
Monaco sample
nTPM
Classical monocyte nTPM: 49.8
Samples: 4
Max nTPM: 56.5
Min nTPM: 41.6
RHH5313_R3680
44.9
RHH5221_R3593
56.2
RHH5250_R3622
56.5
RHH5279_R3651
41.6
Intermediate monocyte nTPM: 44.0
Samples: 4
Max nTPM: 54.7
Min nTPM: 25.5
RHH5314_R3681
54.7
RHH5222_R3594
54.7
RHH5251_R3623
25.5
RHH5280_R3652
41.1
Non-classical monocyte nTPM: 42.5
Samples: 4
Max nTPM: 44.5
Min nTPM: 37.5
RHH5315_R3682
44.1
RHH5223_R3595
44.5
RHH5252_R3624
43.7
RHH5281_R3653
37.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
Schmiedel sample id
TPM
Classical monocyte TPM: 10.4
Samples: 91
Max TPM: 14.6
Min TPM: 6.6
MONOCYTES_1
14.6
MONOCYTES_2
13.8
MONOCYTES_3
13.7
MONOCYTES_4
13.2
MONOCYTES_5
13.1
MONOCYTES_6
13.1
MONOCYTES_7
12.9
MONOCYTES_8
12.7
MONOCYTES_9
12.6
MONOCYTES_10
12.6
MONOCYTES_11
12.5
MONOCYTES_12
12.2
MONOCYTES_13
12.1
MONOCYTES_14
12.1
MONOCYTES_15
12.0
MONOCYTES_16
11.9
MONOCYTES_17
11.9
MONOCYTES_18
11.8
MONOCYTES_19
11.7
MONOCYTES_20
11.7
MONOCYTES_21
11.7
MONOCYTES_22
11.5
MONOCYTES_23
11.5
MONOCYTES_24
11.5
MONOCYTES_25
11.5
MONOCYTES_26
11.4
MONOCYTES_27
11.4
MONOCYTES_28
11.4
MONOCYTES_29
11.3
MONOCYTES_30
11.3
MONOCYTES_31
11.2
MONOCYTES_32
11.2
MONOCYTES_33
11.0
MONOCYTES_34
11.0
MONOCYTES_35
11.0
MONOCYTES_36
10.9
MONOCYTES_37
10.9
MONOCYTES_38
10.8
MONOCYTES_39
10.8
MONOCYTES_40
10.8
MONOCYTES_41
10.7
MONOCYTES_42
10.7
MONOCYTES_43
10.6
MONOCYTES_44
10.5
MONOCYTES_45
10.5
MONOCYTES_46
10.5
MONOCYTES_47
10.5
MONOCYTES_48
10.4
MONOCYTES_49
10.3
MONOCYTES_50
10.2
MONOCYTES_51
10.2
MONOCYTES_52
10.2
MONOCYTES_53
10.2
MONOCYTES_54
10.1
MONOCYTES_55
10.1
MONOCYTES_56
10.0
MONOCYTES_57
10.0
MONOCYTES_58
9.9
MONOCYTES_59
9.9
MONOCYTES_60
9.8
MONOCYTES_61
9.7
MONOCYTES_62
9.7
MONOCYTES_63
9.7
MONOCYTES_64
9.6
MONOCYTES_65
9.6
MONOCYTES_66
9.5
MONOCYTES_67
9.4
MONOCYTES_68
9.4
MONOCYTES_69
9.4
MONOCYTES_70
9.3
MONOCYTES_71
9.3
MONOCYTES_72
9.1
MONOCYTES_73
9.0
MONOCYTES_74
8.9
MONOCYTES_75
8.7
MONOCYTES_76
8.7
MONOCYTES_77
8.6
MONOCYTES_78
8.5
MONOCYTES_79
8.4
MONOCYTES_80
8.4
MONOCYTES_81
8.3
MONOCYTES_82
8.3
MONOCYTES_83
8.3
MONOCYTES_84
8.3
MONOCYTES_85
7.8
MONOCYTES_86
7.7
MONOCYTES_87
7.7
MONOCYTES_88
7.4
MONOCYTES_89
7.3
MONOCYTES_90
6.8
MONOCYTES_91
6.6
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Non-classical monocyte TPM: 10.6
Samples: 90
Max TPM: 13.7
Min TPM: 7.2
M2_1
13.7
M2_2
13.7
M2_3
13.3
M2_4
13.0
M2_5
12.7
M2_6
12.7
M2_7
12.6
M2_8
12.5
M2_9
12.3
M2_10
12.3
M2_11
12.3
M2_12
12.3
M2_13
12.2
M2_14
12.2
M2_15
12.1
M2_16
12.1
M2_17
12.1
M2_18
12.0
M2_19
11.8
M2_20
11.7
M2_21
11.7
M2_22
11.6
M2_23
11.5
M2_24
11.5
M2_25
11.5
M2_26
11.4
M2_27
11.4
M2_28
11.3
M2_29
11.3
M2_30
11.3
M2_31
11.2
M2_32
11.1
M2_33
11.0
M2_34
11.0
M2_35
11.0
M2_36
10.8
M2_37
10.8
M2_38
10.8
M2_39
10.8
M2_40
10.8
M2_41
10.8
M2_42
10.7
M2_43
10.7
M2_44
10.7
M2_45
10.6
M2_46
10.6
M2_47
10.5
M2_48
10.4
M2_49
10.3
M2_50
10.2
M2_51
10.2
M2_52
10.2
M2_53
10.2
M2_54
10.1
M2_55
10.1
M2_56
10.1
M2_57
10.1
M2_58
10.1
M2_59
10.0
M2_60
9.9
M2_61
9.9
M2_62
9.9
M2_63
9.8
M2_64
9.8
M2_65
9.8
M2_66
9.7
M2_67
9.7
M2_68
9.7
M2_69
9.7
M2_70
9.6
M2_71
9.6
M2_72
9.5
M2_73
9.5
M2_74
9.4
M2_75
9.3
M2_76
9.3
M2_77
9.2
M2_78
8.9
M2_79
8.9
M2_80
8.8
M2_81
8.8
M2_82
8.7
M2_83
8.7
M2_84
8.7
M2_85
8.6
M2_86
8.6
M2_87
8.4
M2_88
8.2
M2_89
7.7
M2_90
7.2
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