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  • FABP5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:173.6 nTPM
HPA Brain:50.3 nTPM
GTEx:173.6 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:302.3 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.3
Sample id Sample description nTPM
Amygdala
nTPM: 47.4
1987 Female, age 91, left hemisphere 71.0
2695 Female, age 67, right hemisphere 42.4
2517 Female, age 94, left hemisphere 41.8
2514 Male, age 75, right hemisphere 41.1
2814 Male, age 76, right hemisphere 40.5
Basal amygdala
nTPM: 36.3
1955 Male, age 76, both hemispheres 56.9
2243 Female, age 91, right hemisphere 40.1
2110 Male, age 80, left hemisphere 38.1
2685 Female, age 94, left hemisphere 33.4
2609 Male, age 75, right hemisphere 25.1
2827 Female, age 67, right hemisphere 24.3
Central amygdala
nTPM: 50.3
2515 Male, age 75, right hemisphere 78.5
2701 Female, age 91, right hemisphere 50.1
2239 Male, age 80, left hemisphere 46.6
1905 Male, age 76, both hemispheres 45.1
2826 Female, age 94, left hemisphere 31.1
Corticomedial amygdala
nTPM: 41.8
2240 Male, age 76, both hemispheres 52.6
2242 Female, age 91, right hemisphere 49.8
2429 Female, age 94, left hemisphere 45.1
2829 Male, age 80, left hemisphere 37.6
2535 Female, age 67, right hemisphere 34.1
2428 Male, age 75, right hemisphere 31.4
Lateral amygdala
nTPM: 33.9
2256 Male, age 80, left hemisphere 59.2
1883 Male, age 76, both hemispheres 39.0
2255 Female, age 91, right hemisphere 33.0
2534 Female, age 94, left hemisphere 30.4
2516 Male, age 75, right hemisphere 22.3
2830 Female, age 67, right hemisphere 19.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 173.6
Samples: 181

Max nTPM: 880.6
Min nTPM: 44.3
Std nTPM: 126.9
Median nTPM: 133.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 880.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 817.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 737.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 647.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 561.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 522.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 504.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 504.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 451.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 437.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 428.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 366.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 356.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 341.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 333.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 323.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 322.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 315.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 303.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 301.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 295.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 272.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 270.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 251.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 247.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 240.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 239.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 225.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 224.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 220.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 219.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 218.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 217.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 215.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 211.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 206.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 201.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 200.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 189.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 189.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 186.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 176.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 170.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 170.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 169.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 168.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 167.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 166.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 164.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 159.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 156.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 154.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 152.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 152.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 150.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 149.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 149.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 149.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 148.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 146.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 146.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 145.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 145.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 144.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 143.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 142.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 141.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 140.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 140.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 139.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 137.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 136.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 135.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 135.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 134.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 133.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 131.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 130.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 128.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 128.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 128.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 127.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 126.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 125.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 124.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 124.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 124.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 124.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 123.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 123.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 121.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 120.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 120.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 120.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 120.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 118.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 117.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 117.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 115.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 114.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 114.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 114.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 114.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 111.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 111.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 110.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 109.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 109.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 109.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 103.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 103.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 102.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 100.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 100.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 99.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 97.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 95.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 94.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 93.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 93.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 92.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 88.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 88.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 86.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 84.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 83.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 80.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 80.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 78.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 73.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 66.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 53.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 44.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.6
FF:10151-102I7 76 years, female 52.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.3
Pig sample Sample description nTPM
Amygdala
nTPM: 7.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.4
Sample A Female 9.1
Sample B Female 6.9
Sample C Male 6.6
Sample D Male 6.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

302.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 302.3
Samples: 4

Max nTPM: 330.1
Min nTPM: 278.9
Sample A Male 278.9
Sample B Male 296.6
Sample C Female 330.1
Sample D Female 303.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
70634396 Antisense, RP_050725_01_F09, Mouse strain C57BL/6J (56 days, male) 6.8
631728 Antisense, RP_040907_01_C08, Mouse strain C57BL/6J (56 days, male) 0.5

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