MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:170.0 nTPM
HPA Brain:84.8 nTPM
GTEx:170.0 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:363.8 nTPM
Allen mouse:4.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
1870 Female, age 42, unknown 63.3
1833 Male, age 53, unknown 53.5
1830 Male, age 51, unknown 49.6
2411 Female, age 72, unknown 45.5
2586 Male, age 75, left hemisphere 43.0
1827 Male, age 72, unknown 41.9
2828 Female, age 72, unknown 40.7
2219 Male, age 76, both hemispheres 39.5
2019 Male, age 18, unknown 38.4
2666 Male, age 74, left hemisphere 33.2
Dorsal raphe nucleus
nTPM: 61.4
2016 Female, age 72, unknown 75.3
2298 Female, age 72, unknown 66.0
1828 Male, age 53, unknown 64.7
2047 Male, age 72, unknown 56.5
2750 Male, age 76, both hemispheres 44.3
Inferior colliculus
nTPM: 49.7
2849 Male, age 72, unknown 67.7
1848 Female, age 42, unknown 48.6
1890 Male, age 53, unknown 46.3
2097 Female, age 72, unknown 36.3
Median raphe nucleus
nTPM: 55.2
2220 Male, age 76, midline 55.2
Periaquaductal grey, anterior
nTPM: 53.2
1795 Male, age 51, unknown 57.4
1947 Male, age 18, unknown 56.2
2502 Female, age 75, unknown 45.9
Periaquaductal grey, dorsal
nTPM: 84.8
2850 Male, age 76, both hemispheres 147.3
1840 Male, age 53, unknown 74.8
1831 Male, age 72, unknown 66.8
2464 Female, age 72, unknown 50.2
Periaquaductal grey, lateral
nTPM: 83.7
2140 Male, age 76, both hemispheres 110.0
2272 Male, age 74, both hemispheres 73.9
2053 Male, age 18, unknown 67.2
Pretectal area
nTPM: 59.0
2224 Female, age 72, unknown 92.1
2407 Male, age 75, both hemispheres 90.3
2273 Male, age 74, both hemispheres 86.1
2825 Male, age 18, unknown 71.6
2316 Male, age 76, right hemisphere 60.7
2667 Female, age 75, unknown 51.6
1944 Female, age 72, unknown 45.0
1815 Male, age 53, unknown 42.0
1817 Female, age 42, unknown 40.6
1816 Male, age 51, unknown 34.9
2007 Male, age 72, unknown 34.3
Red nucleus
nTPM: 42.9
2725 Female, age 75, unknown 59.6
2227 Male, age 72, unknown 46.6
1954 Female, age 42, unknown 46.4
1821 Female, age 72, unknown 46.3
2769 Male, age 72, unknown 43.9
1865 Male, age 51, unknown 43.0
2823 Male, age 76, right hemisphere 41.5
2503 Female, age 72, unknown 40.0
1904 Male, age 53, unknown 39.7
2785 Male, age 18, unknown 39.3
2584 Male, age 75, left hemisphere 34.8
2588 Male, age 74, left hemisphere 33.9
Substantia nigra
nTPM: 57.5
1916 Female, age 42, unknown 76.7
2699 Male, age 18, unknown 74.3
1941 Male, age 53, unknown 69.6
2409 Female, age 72, unknown 62.0
2241 Male, age 72, unknown 61.5
1851 Male, age 51, unknown 54.4
2590 Female, age 75, unknown 52.2
1889 Female, age 72, unknown 47.6
2583 Male, age 75, right hemisphere 41.3
2665 Male, age 74, both hemispheres 35.1
Superior colliculus
nTPM: 51.6
2664 Male, age 75, both hemispheres 64.0
2587 Male, age 74, left hemisphere 63.6
1839 Male, age 51, unknown 62.4
1995 Male, age 72, unknown 61.7
1796 Male, age 53, unknown 53.0
2668 Female, age 75, unknown 47.8
1913 Female, age 42, unknown 44.8
2261 Male, age 18, unknown 41.9
1895 Male, age 76, right hemisphere 38.8
2087 Female, age 72, unknown 38.5
Ventral tegmental area
nTPM: 61.8
2223 Female, age 72, unknown 69.3
1915 Female, age 42, unknown 66.6
2218 Male, age 76, both hemispheres 65.9
1942 Male, age 51, unknown 65.7
2021 Male, age 53, unknown 56.1
2410 Female, age 72, unknown 47.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 170.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 170.0
Samples: 183

Max nTPM: 910.4
Min nTPM: 57.3
Std nTPM: 117.0
Median nTPM: 136.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 910.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 891.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 718.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 560.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 483.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 470.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 434.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 416.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 406.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 340.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 331.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 15.2
Min nTPM: 8.8
Sample A Female 15.2
Sample B Female 11.8
Sample C Male 13.0
Sample D Male 8.8
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 3.7
Sample A Female 9.7
Sample B Female 12.3
Sample C Male 5.0
Sample D Male 3.7
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.6
Min nTPM: 7.8
Sample B Female 7.8
Sample C Male 10.6
Sample D Male 9.3
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 37.1
Min nTPM: 6.2
Sample A Female 8.8
Sample B Female 37.1
Sample C Male 6.2
Sample D Male 8.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 363.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 363.8
Samples: 4

Max nTPM: 383.6
Min nTPM: 336.1
Sample A Male 383.6
Sample B Male 354.5
Sample C Female 336.1
Sample D Female 381.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
70634396 Antisense, RP_050725_01_F09, Mouse strain C57BL/6J (56 days, male) 8.5
631728 Antisense, RP_040907_01_C08, Mouse strain C57BL/6J (56 days, male) 0.5

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