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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:201.4 nTPM
HPA Brain:450.9 nTPM
GTEx:201.4 nTPM
FANTOM5:243.6 Scaled Tags Per Million
Pig:492.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

450.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 351.0
2565 Male, age 75, midline 418.2
1981 Female, age 72, midline 399.8
2048 Male, age 55, midline 313.7
2194 Female, age 79, both hemispheres 312.1
2816 Male, age 47, midline 311.3
Cervical spinal cord, dorsal horn
nTPM: 450.9
2297 Male, age 75, both hemispheres 544.2
2069 Male, age 47, both hemispheres 477.7
2173 Female, age 72, unknown 449.7
1877 Male, age 55, unknown 415.9
2296 Male, age 66, both hemispheres 410.4
2721 Male, age 90, both hemispheres 407.7
Cervical spinal cord, ventral horn
nTPM: 367.8
2480 Male, age 75, both hemispheres 435.6
2098 Female, age 72, unknown 416.5
2295 Male, age 66, both hemispheres 383.8
2809 Male, age 90, both hemispheres 363.5
2068 Male, age 55, unknown 324.6
2820 Female, age 79, both hemispheres 283.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 201.4
Samples: 204

Max nTPM: 350.5
Min nTPM: 130.7
Std nTPM: 35.4
Median nTPM: 197.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 350.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 329.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 325.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 311.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 296.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 287.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 274.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 269.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 265.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 265.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 262.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 257.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 256.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 255.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 255.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 252.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 248.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 246.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 243.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 243.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 243.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 242.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 242.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 240.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 240.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 239.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 239.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 236.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 236.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 233.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 232.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 231.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 230.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 226.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 226.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 225.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 225.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 224.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 224.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 224.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 224.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 223.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 222.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 222.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 222.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 221.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 221.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 221.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 221.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 220.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 219.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 219.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 218.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 217.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 217.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 217.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 217.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 217.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 216.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 215.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 214.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 213.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 213.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 213.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 212.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 212.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 211.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 211.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 210.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 209.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 209.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 209.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 208.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 207.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 206.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 206.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 204.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 203.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 203.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 202.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 201.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 201.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 201.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 201.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 200.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 200.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 200.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 199.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 199.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 198.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 198.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 198.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 198.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 197.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 197.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 197.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 197.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 197.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 197.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 197.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 196.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 196.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 196.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 195.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 195.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 195.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 194.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 194.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 194.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 194.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 193.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 193.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 193.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 192.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 192.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 192.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 191.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 191.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 191.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 191.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 190.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 190.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 189.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 189.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 189.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 189.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 188.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 188.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 188.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 187.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 186.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 186.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 183.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 183.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 182.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 182.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 182.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 182.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 182.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 179.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 179.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 179.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 179.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 179.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 178.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 177.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 177.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 177.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 177.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 176.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 175.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 175.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 175.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 174.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 174.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 173.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 172.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 172.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 172.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 171.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 171.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 170.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 170.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 170.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 169.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 169.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 169.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 168.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 168.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 167.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 166.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 166.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 165.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 165.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 163.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 163.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 162.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 162.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 162.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 161.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 161.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 160.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 158.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 157.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 155.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 155.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 154.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 152.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 152.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 149.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 145.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 145.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 144.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 142.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 138.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 133.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 130.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 130.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 243.6
FF:10159-103A6 76 years, female 256.0
FF:10181-103D1 60 years, female 231.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

492.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 440.2
Samples: 4

Max nTPM: 458.0
Min nTPM: 419.2
Sample A Female 453.1
Sample B Female 419.2
Sample C Male 458.0
Sample D Male 430.4
Ventral spinal cord
nTPM: 493.0
Samples: 4

Max nTPM: 507.6
Min nTPM: 478.8
Sample A Female 499.0
Sample B Female 507.6
Sample C Male 478.8
Sample D Male 486.4

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