MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:204.8 nTPM
HPA Brain:509.0 nTPM
GTEx:204.8 nTPM
FANTOM5:197.2 Scaled Tags Per Million
Pig:621.5 nTPM
Mouse:423.3 nTPM
Allen mouse:13.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 509.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 364.2
1827 Male, age 72, unknown 520.3
2828 Female, age 72, unknown 431.4
2666 Male, age 74, left hemisphere 426.1
2019 Male, age 18, unknown 421.8
2411 Female, age 72, unknown 348.6
2219 Male, age 76, both hemispheres 330.4
1870 Female, age 42, unknown 319.9
2586 Male, age 75, left hemisphere 316.0
1833 Male, age 53, unknown 265.8
1830 Male, age 51, unknown 261.6
Dorsal raphe nucleus
nTPM: 345.2
2298 Female, age 72, unknown 498.6
2750 Male, age 76, both hemispheres 361.7
2047 Male, age 72, unknown 340.7
1828 Male, age 53, unknown 296.9
2016 Female, age 72, unknown 228.2
Inferior colliculus
nTPM: 285.4
2097 Female, age 72, unknown 374.7
1890 Male, age 53, unknown 272.5
1848 Female, age 42, unknown 263.3
2849 Male, age 72, unknown 231.1
Median raphe nucleus
nTPM: 411.1
2220 Male, age 76, midline 411.1
Periaquaductal grey, anterior
nTPM: 466.6
1795 Male, age 51, unknown 551.6
1947 Male, age 18, unknown 469.5
2502 Female, age 75, unknown 378.7
Periaquaductal grey, dorsal
nTPM: 314.0
1831 Male, age 72, unknown 375.5
2850 Male, age 76, both hemispheres 312.9
1840 Male, age 53, unknown 300.9
2464 Female, age 72, unknown 266.9
Periaquaductal grey, lateral
nTPM: 323.8
2272 Male, age 74, both hemispheres 354.7
2053 Male, age 18, unknown 343.5
2140 Male, age 76, both hemispheres 273.1
Pretectal area
nTPM: 509.0
1816 Male, age 51, unknown 831.8
1944 Female, age 72, unknown 720.3
1817 Female, age 42, unknown 653.8
2007 Male, age 72, unknown 634.8
1815 Male, age 53, unknown 619.4
2667 Female, age 75, unknown 426.0
2224 Female, age 72, unknown 393.7
2273 Male, age 74, both hemispheres 356.9
2407 Male, age 75, both hemispheres 355.1
2825 Male, age 18, unknown 324.2
2316 Male, age 76, right hemisphere 282.5
Red nucleus
nTPM: 291.2
2785 Male, age 18, unknown 403.1
2725 Female, age 75, unknown 379.5
2584 Male, age 75, left hemisphere 325.7
1821 Female, age 72, unknown 308.9
2588 Male, age 74, left hemisphere 298.5
2503 Female, age 72, unknown 283.2
1865 Male, age 51, unknown 274.1
1954 Female, age 42, unknown 269.4
1904 Male, age 53, unknown 263.7
2823 Male, age 76, right hemisphere 250.8
2769 Male, age 72, unknown 220.9
2227 Male, age 72, unknown 216.8
Substantia nigra
nTPM: 426.0
1916 Female, age 42, unknown 556.8
1889 Female, age 72, unknown 556.3
1941 Male, age 53, unknown 481.1
1851 Male, age 51, unknown 451.7
2241 Male, age 72, unknown 423.6
2409 Female, age 72, unknown 409.5
2590 Female, age 75, unknown 384.4
2583 Male, age 75, right hemisphere 362.3
2665 Male, age 74, both hemispheres 360.2
2699 Male, age 18, unknown 274.0
Superior colliculus
nTPM: 410.5
2087 Female, age 72, unknown 560.6
1796 Male, age 53, unknown 533.2
2261 Male, age 18, unknown 496.9
2668 Female, age 75, unknown 449.1
1913 Female, age 42, unknown 400.1
2587 Male, age 74, left hemisphere 395.0
1995 Male, age 72, unknown 344.3
2664 Male, age 75, both hemispheres 319.1
1895 Male, age 76, right hemisphere 312.6
1839 Male, age 51, unknown 294.4
Ventral tegmental area
nTPM: 375.9
2218 Male, age 76, both hemispheres 416.6
2410 Female, age 72, unknown 408.2
1915 Female, age 42, unknown 393.7
2223 Female, age 72, unknown 387.1
2021 Male, age 53, unknown 328.8
1942 Male, age 51, unknown 321.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 204.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 204.8
Samples: 183

Max nTPM: 559.0
Min nTPM: 116.8
Std nTPM: 79.1
Median nTPM: 179.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 559.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 514.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 502.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 501.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 464.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 452.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 437.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 418.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 397.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 373.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 370.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 197.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 197.2
FF:10158-103A5 76 years, female 197.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 621.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 386.1
Samples: 4

Max nTPM: 508.5
Min nTPM: 243.2
Sample A Female 508.5
Sample B Female 354.8
Sample C Male 437.8
Sample D Male 243.2
Midbrain
nTPM: 613.5
Samples: 4

Max nTPM: 1093.4
Min nTPM: 369.7
Sample A Female 465.3
Sample B Female 369.7
Sample C Male 1093.4
Sample D Male 525.4
Periaqueductal gray
nTPM: 357.9
Samples: 3

Max nTPM: 439.9
Min nTPM: 295.8
Sample B Female 338.1
Sample C Male 439.9
Sample D Male 295.8
Superior colliculi
nTPM: 621.5
Samples: 4

Max nTPM: 983.8
Min nTPM: 474.4
Sample A Female 517.9
Sample B Female 474.4
Sample C Male 983.8
Sample D Male 509.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 423.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 423.3
Samples: 4

Max nTPM: 444.2
Min nTPM: 408.0
Sample A Male 408.0
Sample B Male 427.1
Sample C Female 444.2
Sample D Female 413.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
1133 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 13.3
1134 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 9.7

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