A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.7
nTPM
Monaco:
28.4
nTPM
Schmiedel:
17.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.7
HPA sample
nTPM
Classical monocyte nTPM: 55.7
Samples: 6
Max nTPM: 71.9
Min nTPM: 42.6
P10809_1003
42.6
P10809_1020
66.1
P10809_1039
71.9
P10809_1058
45.1
P10809_1080
43.9
P10809_1107
64.5
Intermediate monocyte nTPM: 48.5
Samples: 6
Max nTPM: 70.5
Min nTPM: 19.9
P10809_1004
37.5
P10809_1023
57.4
P10809_1042
64.3
P10809_1061
19.9
P10809_1081
41.5
P10809_1108
70.5
Non-classical monocyte nTPM: 57.7
Samples: 5
Max nTPM: 82.1
Min nTPM: 23.1
P10809_1005
56.8
P10809_1053
75.9
P10809_1072
23.1
P10809_1082
50.7
P10809_1109
82.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
Monaco sample
nTPM
Classical monocyte nTPM: 27.3
Samples: 4
Max nTPM: 38.1
Min nTPM: 14.3
RHH5313_R3680
32.2
RHH5221_R3593
14.3
RHH5250_R3622
24.7
RHH5279_R3651
38.1
Intermediate monocyte nTPM: 28.4
Samples: 4
Max nTPM: 47.3
Min nTPM: 16.8
RHH5314_R3681
47.3
RHH5222_R3594
18.6
RHH5251_R3623
16.8
RHH5280_R3652
30.8
Non-classical monocyte nTPM: 25.8
Samples: 4
Max nTPM: 34.2
Min nTPM: 16.8
RHH5315_R3682
33.4
RHH5223_R3595
18.6
RHH5252_R3624
16.8
RHH5281_R3653
34.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
Schmiedel sample id
TPM
Classical monocyte TPM: 14.6
Samples: 91
Max TPM: 26.6
Min TPM: 6.2
MONOCYTES_1
26.6
MONOCYTES_2
26.4
MONOCYTES_3
23.8
MONOCYTES_4
23.6
MONOCYTES_5
23.6
MONOCYTES_6
21.5
MONOCYTES_7
21.4
MONOCYTES_8
20.8
MONOCYTES_9
20.4
MONOCYTES_10
20.3
MONOCYTES_11
20.3
MONOCYTES_12
20.2
MONOCYTES_13
20.1
MONOCYTES_14
20.0
MONOCYTES_15
19.4
MONOCYTES_16
19.3
MONOCYTES_17
19.1
MONOCYTES_18
18.9
MONOCYTES_19
18.8
MONOCYTES_20
18.3
MONOCYTES_21
17.5
MONOCYTES_22
17.4
MONOCYTES_23
17.1
MONOCYTES_24
17.0
MONOCYTES_25
16.7
MONOCYTES_26
16.7
MONOCYTES_27
16.5
MONOCYTES_28
16.5
MONOCYTES_29
16.3
MONOCYTES_30
16.2
MONOCYTES_31
16.2
MONOCYTES_32
16.1
MONOCYTES_33
15.7
MONOCYTES_34
15.6
MONOCYTES_35
15.6
MONOCYTES_36
15.4
MONOCYTES_37
15.3
MONOCYTES_38
15.3
MONOCYTES_39
15.3
MONOCYTES_40
15.0
MONOCYTES_41
14.7
MONOCYTES_42
14.7
MONOCYTES_43
14.6
MONOCYTES_44
14.6
MONOCYTES_45
14.5
MONOCYTES_46
14.3
MONOCYTES_47
14.2
MONOCYTES_48
14.1
MONOCYTES_49
14.1
MONOCYTES_50
14.1
MONOCYTES_51
13.9
MONOCYTES_52
13.5
MONOCYTES_53
13.4
MONOCYTES_54
13.4
MONOCYTES_55
13.0
MONOCYTES_56
12.7
MONOCYTES_57
12.7
MONOCYTES_58
12.4
MONOCYTES_59
12.2
MONOCYTES_60
12.2
MONOCYTES_61
12.2
MONOCYTES_62
12.1
MONOCYTES_63
12.1
MONOCYTES_64
12.0
MONOCYTES_65
12.0
MONOCYTES_66
12.0
MONOCYTES_67
12.0
MONOCYTES_68
11.9
MONOCYTES_69
11.8
MONOCYTES_70
11.4
MONOCYTES_71
11.4
MONOCYTES_72
11.1
MONOCYTES_73
11.0
MONOCYTES_74
10.9
MONOCYTES_75
10.8
MONOCYTES_76
10.7
MONOCYTES_77
10.6
MONOCYTES_78
9.7
MONOCYTES_79
9.5
MONOCYTES_80
9.3
MONOCYTES_81
9.3
MONOCYTES_82
9.2
MONOCYTES_83
8.0
MONOCYTES_84
7.9
MONOCYTES_85
7.6
MONOCYTES_86
6.9
MONOCYTES_87
6.8
MONOCYTES_88
6.8
MONOCYTES_89
6.8
MONOCYTES_90
6.7
MONOCYTES_91
6.2
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Non-classical monocyte TPM: 17.2
Samples: 90
Max TPM: 33.8
Min TPM: 5.6
M2_1
33.8
M2_2
32.0
M2_3
31.6
M2_4
30.7
M2_5
30.1
M2_6
27.4
M2_7
26.9
M2_8
26.7
M2_9
26.6
M2_10
26.5
M2_11
24.9
M2_12
24.3
M2_13
24.0
M2_14
23.9
M2_15
23.7
M2_16
23.3
M2_17
23.0
M2_18
22.2
M2_19
22.0
M2_20
21.5
M2_21
21.4
M2_22
21.3
M2_23
21.0
M2_24
20.8
M2_25
20.6
M2_26
20.2
M2_27
19.8
M2_28
19.6
M2_29
19.3
M2_30
19.3
M2_31
19.1
M2_32
19.1
M2_33
18.7
M2_34
18.5
M2_35
18.5
M2_36
18.4
M2_37
18.4
M2_38
18.1
M2_39
18.1
M2_40
17.7
M2_41
17.7
M2_42
17.6
M2_43
17.3
M2_44
17.3
M2_45
17.1
M2_46
16.9
M2_47
16.7
M2_48
15.9
M2_49
15.7
M2_50
15.4
M2_51
15.0
M2_52
14.9
M2_53
14.7
M2_54
14.7
M2_55
14.6
M2_56
14.5
M2_57
14.0
M2_58
13.8
M2_59
13.5
M2_60
13.4
M2_61
13.3
M2_62
13.2
M2_63
13.2
M2_64
13.1
M2_65
12.9
M2_66
12.6
M2_67
12.3
M2_68
12.3
M2_69
12.2
M2_70
12.0
M2_71
12.0
M2_72
11.9
M2_73
11.9
M2_74
11.8
M2_75
11.7
M2_76
11.6
M2_77
11.1
M2_78
10.8
M2_79
10.5
M2_80
10.5
M2_81
9.7
M2_82
9.2
M2_83
9.0
M2_84
8.9
M2_85
8.8
M2_86
8.3
M2_87
7.0
M2_88
6.9
M2_89
6.4
M2_90
5.6
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