MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:18.7 nTPM
GTEx:23.9 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:20.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2019 Male, age 18, unknown 23.1
2586 Male, age 75, left hemisphere 21.5
2411 Female, age 72, unknown 19.5
2828 Female, age 72, unknown 17.3
1870 Female, age 42, unknown 16.5
1833 Male, age 53, unknown 16.2
1827 Male, age 72, unknown 16.0
2219 Male, age 76, both hemispheres 15.3
2666 Male, age 74, left hemisphere 14.7
1830 Male, age 51, unknown 14.4
Dorsal raphe nucleus
nTPM: 18.7
2047 Male, age 72, unknown 21.4
1828 Male, age 53, unknown 21.2
2298 Female, age 72, unknown 19.2
2016 Female, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 15.5
Inferior colliculus
nTPM: 16.4
1890 Male, age 53, unknown 17.3
2097 Female, age 72, unknown 16.5
1848 Female, age 42, unknown 16.0
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Periaquaductal grey, anterior
nTPM: 17.3
1947 Male, age 18, unknown 17.7
1795 Male, age 51, unknown 17.3
2502 Female, age 75, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 15.4
2464 Female, age 72, unknown 17.4
1840 Male, age 53, unknown 15.8
1831 Male, age 72, unknown 15.1
2850 Male, age 76, both hemispheres 13.3
Periaquaductal grey, lateral
nTPM: 14.1
2272 Male, age 74, both hemispheres 17.2
2053 Male, age 18, unknown 12.8
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 18.0
2007 Male, age 72, unknown 23.0
1817 Female, age 42, unknown 22.9
2667 Female, age 75, unknown 19.9
1816 Male, age 51, unknown 19.8
1944 Female, age 72, unknown 19.5
2273 Male, age 74, both hemispheres 17.9
1815 Male, age 53, unknown 17.1
2224 Female, age 72, unknown 16.2
2825 Male, age 18, unknown 14.1
2316 Male, age 76, right hemisphere 13.9
2407 Male, age 75, both hemispheres 13.6
Red nucleus
nTPM: 17.7
2785 Male, age 18, unknown 23.4
1865 Male, age 51, unknown 19.3
1821 Female, age 72, unknown 18.3
2823 Male, age 76, right hemisphere 18.2
2769 Male, age 72, unknown 18.0
2588 Male, age 74, left hemisphere 17.9
1954 Female, age 42, unknown 17.3
2503 Female, age 72, unknown 17.3
2227 Male, age 72, unknown 17.1
1904 Male, age 53, unknown 16.6
2725 Female, age 75, unknown 15.8
2584 Male, age 75, left hemisphere 13.6
Substantia nigra
nTPM: 16.3
1889 Female, age 72, unknown 19.9
1851 Male, age 51, unknown 19.5
1941 Male, age 53, unknown 17.6
2409 Female, age 72, unknown 17.6
1916 Female, age 42, unknown 17.3
2665 Male, age 74, both hemispheres 15.7
2583 Male, age 75, right hemisphere 15.6
2699 Male, age 18, unknown 13.5
2241 Male, age 72, unknown 13.1
2590 Female, age 75, unknown 12.8
Superior colliculus
nTPM: 17.2
2668 Female, age 75, unknown 21.8
2664 Male, age 75, both hemispheres 19.8
2087 Female, age 72, unknown 18.6
1895 Male, age 76, right hemisphere 16.8
1913 Female, age 42, unknown 16.7
2587 Male, age 74, left hemisphere 16.6
1995 Male, age 72, unknown 15.9
1796 Male, age 53, unknown 15.8
2261 Male, age 18, unknown 15.0
1839 Male, age 51, unknown 14.8
Ventral tegmental area
nTPM: 16.1
2410 Female, age 72, unknown 19.4
1915 Female, age 42, unknown 17.6
2223 Female, age 72, unknown 15.9
1942 Male, age 51, unknown 14.9
2021 Male, age 53, unknown 14.8
2218 Male, age 76, both hemispheres 14.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 42.0
Min nTPM: 12.6
Std nTPM: 5.7
Median nTPM: 22.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 35.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 35.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 35.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 18.1
Min nTPM: 12.6
Sample A Female 18.1
Sample B Female 14.8
Sample C Male 14.7
Sample D Male 12.6
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.4
Sample A Female 16.7
Sample B Female 15.4
Sample C Male 14.8
Sample D Male 13.4
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.4
Min nTPM: 12.5
Sample B Female 15.8
Sample C Male 16.4
Sample D Male 12.5
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 19.1
Min nTPM: 14.0
Sample A Female 19.1
Sample B Female 17.0
Sample C Male 15.8
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 23.5
Min nTPM: 18.9
Sample A Male 21.2
Sample B Male 20.0
Sample C Female 18.9
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68845538 Antisense, RP_050224_02_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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