MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:55.2 nTPM
GTEx:38.9 nTPM
FANTOM5:98.5 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:38.0 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.3
2586 Male, age 75, left hemisphere 62.2
2019 Male, age 18, unknown 59.5
2666 Male, age 74, left hemisphere 57.8
1870 Female, age 42, unknown 52.7
1833 Male, age 53, unknown 52.0
1827 Male, age 72, unknown 50.2
2828 Female, age 72, unknown 50.0
1830 Male, age 51, unknown 48.9
2411 Female, age 72, unknown 48.4
2219 Male, age 76, both hemispheres 41.0
Dorsal raphe nucleus
nTPM: 49.8
1828 Male, age 53, unknown 53.4
2016 Female, age 72, unknown 50.8
2047 Male, age 72, unknown 48.7
2298 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 47.9
Inferior colliculus
nTPM: 55.0
2849 Male, age 72, unknown 59.5
1848 Female, age 42, unknown 56.5
1890 Male, age 53, unknown 52.3
2097 Female, age 72, unknown 51.4
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Periaquaductal grey, anterior
nTPM: 52.0
1947 Male, age 18, unknown 53.1
2502 Female, age 75, unknown 52.6
1795 Male, age 51, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 51.9
2850 Male, age 76, both hemispheres 63.6
1840 Male, age 53, unknown 53.5
2464 Female, age 72, unknown 45.6
1831 Male, age 72, unknown 44.8
Periaquaductal grey, lateral
nTPM: 53.7
2140 Male, age 76, both hemispheres 61.2
2053 Male, age 18, unknown 51.2
2272 Male, age 74, both hemispheres 48.7
Pretectal area
nTPM: 55.2
1817 Female, age 42, unknown 65.0
2007 Male, age 72, unknown 62.1
1816 Male, age 51, unknown 60.2
1944 Female, age 72, unknown 59.7
1815 Male, age 53, unknown 58.6
2407 Male, age 75, both hemispheres 53.5
2316 Male, age 76, right hemisphere 52.7
2667 Female, age 75, unknown 51.9
2273 Male, age 74, both hemispheres 49.9
2224 Female, age 72, unknown 47.3
2825 Male, age 18, unknown 46.0
Red nucleus
nTPM: 52.4
1821 Female, age 72, unknown 59.1
2785 Male, age 18, unknown 57.8
1865 Male, age 51, unknown 54.5
1954 Female, age 42, unknown 53.2
2227 Male, age 72, unknown 52.5
2769 Male, age 72, unknown 52.2
2725 Female, age 75, unknown 52.1
2588 Male, age 74, left hemisphere 52.0
2503 Female, age 72, unknown 51.2
1904 Male, age 53, unknown 50.4
2823 Male, age 76, right hemisphere 47.9
2584 Male, age 75, left hemisphere 46.4
Substantia nigra
nTPM: 55.2
1916 Female, age 42, unknown 61.9
1889 Female, age 72, unknown 58.3
1941 Male, age 53, unknown 58.3
2241 Male, age 72, unknown 56.4
1851 Male, age 51, unknown 55.8
2583 Male, age 75, right hemisphere 54.8
2590 Female, age 75, unknown 53.0
2665 Male, age 74, both hemispheres 52.6
2699 Male, age 18, unknown 52.6
2409 Female, age 72, unknown 48.4
Superior colliculus
nTPM: 52.2
2664 Male, age 75, both hemispheres 58.6
2668 Female, age 75, unknown 56.9
2087 Female, age 72, unknown 52.7
2261 Male, age 18, unknown 52.7
1796 Male, age 53, unknown 52.1
2587 Male, age 74, left hemisphere 51.5
1839 Male, age 51, unknown 51.1
1995 Male, age 72, unknown 50.1
1913 Female, age 42, unknown 48.8
1895 Male, age 76, right hemisphere 47.9
Ventral tegmental area
nTPM: 48.4
2410 Female, age 72, unknown 54.9
2218 Male, age 76, both hemispheres 50.7
1915 Female, age 42, unknown 50.5
1942 Male, age 51, unknown 46.8
2223 Female, age 72, unknown 46.3
2021 Male, age 53, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 183

Max nTPM: 59.7
Min nTPM: 27.5
Std nTPM: 5.8
Median nTPM: 37.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 59.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 57.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 56.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 55.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 55.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 52.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 50.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 50.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 49.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.5
FF:10158-103A5 76 years, female 98.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.3
Samples: 4

Max nTPM: 56.4
Min nTPM: 39.8
Sample A Female 56.4
Sample B Female 39.8
Sample C Male 51.2
Sample D Male 41.6
Midbrain
nTPM: 46.5
Samples: 4

Max nTPM: 52.0
Min nTPM: 43.1
Sample A Female 52.0
Sample B Female 46.8
Sample C Male 43.1
Sample D Male 43.9
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 46.1
Min nTPM: 41.7
Sample B Female 43.9
Sample C Male 46.1
Sample D Male 41.7
Superior colliculi
nTPM: 46.4
Samples: 4

Max nTPM: 52.6
Min nTPM: 38.2
Sample A Female 52.6
Sample B Female 38.2
Sample C Male 43.7
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 39.2
Min nTPM: 37.0
Sample A Male 39.2
Sample B Male 38.8
Sample C Female 37.1
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74957898 Antisense, RP_060315_05_A04, Mouse strain C57BL/6J (56 days, male) 0.8
70194474 Antisense, RP_050517_01_E02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo