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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:217.7 nTPM
HPA Brain:233.5 nTPM
GTEx:217.7 nTPM
FANTOM5:484.5 Scaled Tags Per Million
Pig:194.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 200.0
1981 Female, age 72, midline 253.9
2048 Male, age 55, midline 207.7
2565 Male, age 75, midline 185.0
2816 Male, age 47, midline 181.3
2194 Female, age 79, both hemispheres 172.5
Cervical spinal cord, dorsal horn
nTPM: 233.5
2173 Female, age 72, unknown 266.9
2296 Male, age 66, both hemispheres 265.9
2069 Male, age 47, both hemispheres 265.1
2297 Male, age 75, both hemispheres 209.9
1877 Male, age 55, unknown 208.9
2721 Male, age 90, both hemispheres 184.6
Cervical spinal cord, ventral horn
nTPM: 195.7
2098 Female, age 72, unknown 282.7
2809 Male, age 90, both hemispheres 210.2
2295 Male, age 66, both hemispheres 181.8
2068 Male, age 55, unknown 180.7
2480 Male, age 75, both hemispheres 177.7
2820 Female, age 79, both hemispheres 141.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 217.7
Samples: 204

Max nTPM: 303.4
Min nTPM: 143.7
Std nTPM: 29.9
Median nTPM: 218.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 303.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 287.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 283.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 282.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 282.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 280.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 280.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 276.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 272.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 265.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 264.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 261.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 260.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 260.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 258.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 257.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 256.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 256.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 255.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 255.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 254.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 252.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 252.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 251.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 249.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 249.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 248.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 248.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 247.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 246.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 245.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 245.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 245.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 244.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 244.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 242.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 242.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 242.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 242.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 242.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 242.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 241.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 241.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 240.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 239.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 239.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 239.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 238.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 238.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 237.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 237.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 236.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 236.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 236.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 235.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 235.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 235.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 234.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 234.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 233.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 232.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 232.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 232.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 232.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 232.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 231.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 231.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 230.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 229.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 229.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 228.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 228.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 228.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 228.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 228.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 227.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 227.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 226.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 225.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 225.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 225.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 225.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 224.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 224.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 224.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 223.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 223.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 223.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 222.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 222.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 221.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 221.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 221.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 220.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 220.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 220.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 220.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 218.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 218.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 218.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 217.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 217.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 217.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 217.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 215.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 215.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 215.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 215.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 214.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 214.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 213.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 213.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 213.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 212.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 212.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 212.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 211.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 211.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 211.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 210.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 210.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 210.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 209.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 209.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 208.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 208.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 207.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 207.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 205.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 205.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 204.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 204.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 204.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 203.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 203.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 202.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 201.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 201.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 201.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 201.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 200.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 199.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 199.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 199.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 199.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 199.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 199.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 198.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 197.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 197.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 197.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 196.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 196.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 195.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 194.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 193.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 192.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 191.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 191.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 190.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 190.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 190.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 188.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 188.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 187.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 186.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 186.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 185.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 184.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 184.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 184.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 183.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 183.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 183.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 183.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 180.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 180.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 180.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 179.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 179.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 177.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 176.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 175.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 175.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 173.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 170.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 170.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 169.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 169.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 168.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 167.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 161.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 161.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 159.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 154.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 145.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 143.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

484.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 484.5
FF:10181-103D1 60 years, female 619.8
FF:10159-103A6 76 years, female 349.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 190.1
Samples: 4

Max nTPM: 220.3
Min nTPM: 161.1
Sample A Female 161.1
Sample B Female 205.9
Sample C Male 220.3
Sample D Male 173.2
Ventral spinal cord
nTPM: 194.0
Samples: 4

Max nTPM: 207.6
Min nTPM: 179.7
Sample A Female 179.7
Sample B Female 207.6
Sample C Male 187.1
Sample D Male 201.7

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