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  • MID1IP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:146.8 nTPM
HPA Brain:145.9 nTPM
GTEx:146.8 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:223.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 130.5
2565 Male, age 75, midline 161.0
1981 Female, age 72, midline 137.0
2194 Female, age 79, both hemispheres 128.0
2816 Male, age 47, midline 120.0
2048 Male, age 55, midline 106.4
Cervical spinal cord, dorsal horn
nTPM: 116.5
2296 Male, age 66, both hemispheres 139.1
2173 Female, age 72, unknown 135.9
1877 Male, age 55, unknown 118.7
2069 Male, age 47, both hemispheres 116.2
2297 Male, age 75, both hemispheres 100.9
2721 Male, age 90, both hemispheres 88.0
Cervical spinal cord, ventral horn
nTPM: 145.9
2809 Male, age 90, both hemispheres 171.8
2480 Male, age 75, both hemispheres 171.2
2098 Female, age 72, unknown 144.2
2295 Male, age 66, both hemispheres 135.4
2068 Male, age 55, unknown 132.0
2820 Female, age 79, both hemispheres 121.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 146.8
Samples: 204

Max nTPM: 344.7
Min nTPM: 57.4
Std nTPM: 48.1
Median nTPM: 135.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 344.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 301.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 293.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 287.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 285.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 285.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 271.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 271.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 269.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 250.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 248.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 233.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 225.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 224.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 224.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 215.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 215.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 212.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 205.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 205.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 204.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 202.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 201.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 200.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 195.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 195.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 194.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 193.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 192.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 189.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 189.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 187.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 184.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 183.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 180.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 179.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 175.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 174.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 173.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 172.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 172.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 172.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 171.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 170.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 170.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 169.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 168.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 168.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 168.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 167.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 166.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 166.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 166.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 165.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 164.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 161.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 160.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 160.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 159.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 159.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 158.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 155.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 155.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 155.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 154.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 152.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 152.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 151.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 151.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 151.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 151.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 151.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 150.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 149.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 149.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 149.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 146.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 144.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 143.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 142.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 142.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 142.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 141.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 139.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 138.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 138.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 137.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 137.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 137.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 136.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 136.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 136.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 135.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 135.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 134.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 134.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 133.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 133.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 132.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 132.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 132.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 132.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 131.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 130.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 130.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 129.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 129.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 129.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 129.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 128.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 126.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 126.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 126.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 125.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 125.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 124.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 123.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 123.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 123.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 121.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 121.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 120.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 119.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 118.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 118.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 118.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 118.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 117.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 116.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 115.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 114.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 114.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 114.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 114.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 113.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 113.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 112.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 112.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 111.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 111.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 111.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 111.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 109.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 108.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 108.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 108.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 108.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 107.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 107.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 106.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 106.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 105.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 105.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 105.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 105.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 105.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 104.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 103.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 102.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 102.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 102.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 101.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 100.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 98.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 97.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 93.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 92.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 91.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 90.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 89.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 89.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 89.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 88.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 88.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 86.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 81.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 77.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 77.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 75.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 74.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 18.0
FF:10159-103A6 76 years, female 19.2
FF:10181-103D1 60 years, female 16.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.1
Samples: 4

Max nTPM: 191.7
Min nTPM: 155.9
Sample A Female 155.9
Sample B Female 173.8
Sample C Male 162.9
Sample D Male 191.7
Ventral spinal cord
nTPM: 223.7
Samples: 4

Max nTPM: 237.3
Min nTPM: 199.8
Sample A Female 199.8
Sample B Female 236.5
Sample C Male 221.1
Sample D Male 237.3

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