MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.8 nTPM
HPA Brain:99.0 nTPM
GTEx:288.8 nTPM
FANTOM5:233.0 Scaled Tags Per Million
Mouse:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.5
2666 Male, age 74, left hemisphere 91.9
1870 Female, age 42, unknown 89.7
1827 Male, age 72, unknown 81.7
1833 Male, age 53, unknown 80.0
2828 Female, age 72, unknown 78.6
1830 Male, age 51, unknown 76.6
2019 Male, age 18, unknown 75.9
2586 Male, age 75, left hemisphere 75.2
2411 Female, age 72, unknown 73.7
2219 Male, age 76, both hemispheres 71.2
Dorsal raphe nucleus
nTPM: 72.4
1828 Male, age 53, unknown 76.7
2750 Male, age 76, both hemispheres 75.3
2047 Male, age 72, unknown 72.6
2016 Female, age 72, unknown 69.1
2298 Female, age 72, unknown 68.2
Inferior colliculus
nTPM: 82.6
2849 Male, age 72, unknown 91.5
1890 Male, age 53, unknown 89.2
1848 Female, age 42, unknown 77.1
2097 Female, age 72, unknown 72.7
Median raphe nucleus
nTPM: 99.0
2220 Male, age 76, midline 99.0
Periaquaductal grey, anterior
nTPM: 74.4
2502 Female, age 75, unknown 80.9
1947 Male, age 18, unknown 72.6
1795 Male, age 51, unknown 69.8
Periaquaductal grey, dorsal
nTPM: 78.4
2850 Male, age 76, both hemispheres 91.7
1840 Male, age 53, unknown 81.7
1831 Male, age 72, unknown 76.3
2464 Female, age 72, unknown 64.0
Periaquaductal grey, lateral
nTPM: 71.1
2140 Male, age 76, both hemispheres 81.0
2053 Male, age 18, unknown 76.3
2272 Male, age 74, both hemispheres 56.1
Pretectal area
nTPM: 76.2
1817 Female, age 42, unknown 90.5
1816 Male, age 51, unknown 89.6
1815 Male, age 53, unknown 84.7
2825 Male, age 18, unknown 83.8
1944 Female, age 72, unknown 82.6
2007 Male, age 72, unknown 77.8
2407 Male, age 75, both hemispheres 76.5
2667 Female, age 75, unknown 67.9
2224 Female, age 72, unknown 67.1
2316 Male, age 76, right hemisphere 64.8
2273 Male, age 74, both hemispheres 52.6
Red nucleus
nTPM: 90.3
2503 Female, age 72, unknown 111.3
2725 Female, age 75, unknown 98.0
2584 Male, age 75, left hemisphere 96.6
1865 Male, age 51, unknown 95.3
2588 Male, age 74, left hemisphere 92.1
1821 Female, age 72, unknown 90.3
2769 Male, age 72, unknown 86.7
2785 Male, age 18, unknown 83.6
2823 Male, age 76, right hemisphere 83.4
2227 Male, age 72, unknown 82.7
1954 Female, age 42, unknown 82.0
1904 Male, age 53, unknown 81.9
Substantia nigra
nTPM: 91.7
1916 Female, age 42, unknown 105.0
2409 Female, age 72, unknown 101.2
2699 Male, age 18, unknown 100.0
2665 Male, age 74, both hemispheres 98.7
1851 Male, age 51, unknown 94.5
1889 Female, age 72, unknown 93.6
2241 Male, age 72, unknown 87.8
1941 Male, age 53, unknown 84.8
2590 Female, age 75, unknown 83.0
2583 Male, age 75, right hemisphere 68.1
Superior colliculus
nTPM: 81.0
2587 Male, age 74, left hemisphere 97.7
1913 Female, age 42, unknown 91.3
1895 Male, age 76, right hemisphere 84.8
2668 Female, age 75, unknown 82.6
1796 Male, age 53, unknown 81.8
1995 Male, age 72, unknown 80.8
1839 Male, age 51, unknown 76.9
2087 Female, age 72, unknown 75.4
2261 Male, age 18, unknown 69.8
2664 Male, age 75, both hemispheres 69.3
Ventral tegmental area
nTPM: 84.9
2223 Female, age 72, unknown 96.9
1915 Female, age 42, unknown 93.5
2218 Male, age 76, both hemispheres 91.2
2410 Female, age 72, unknown 81.9
1942 Male, age 51, unknown 74.2
2021 Male, age 53, unknown 71.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 288.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.8
Samples: 183

Max nTPM: 749.0
Min nTPM: 149.5
Std nTPM: 89.0
Median nTPM: 271.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 749.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 572.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 528.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 513.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 494.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 494.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 474.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 457.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 449.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 442.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 442.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 233.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.0
FF:10158-103A5 76 years, female 233.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo