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  • ATP5F1C
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:130.4 nTPM
HPA Brain:92.1 nTPM
GTEx:130.4 nTPM
FANTOM5:154.7 Scaled Tags Per Million
Pig:66.2 nTPM
Mouse:426.6 nTPM
Allen mouse:10.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Sample id Sample description nTPM
Amygdala
nTPM: 92.1
2814 Male, age 76, right hemisphere 120.7
2514 Male, age 75, right hemisphere 99.6
2695 Female, age 67, right hemisphere 94.2
1987 Female, age 91, left hemisphere 82.2
2517 Female, age 94, left hemisphere 63.8
Basal amygdala
nTPM: 66.4
2609 Male, age 75, right hemisphere 78.5
1955 Male, age 76, both hemispheres 73.1
2110 Male, age 80, left hemisphere 67.4
2243 Female, age 91, right hemisphere 64.5
2685 Female, age 94, left hemisphere 62.1
2827 Female, age 67, right hemisphere 52.7
Central amygdala
nTPM: 76.7
1905 Male, age 76, both hemispheres 101.5
2826 Female, age 94, left hemisphere 82.7
2515 Male, age 75, right hemisphere 75.2
2239 Male, age 80, left hemisphere 63.8
2701 Female, age 91, right hemisphere 60.2
Corticomedial amygdala
nTPM: 70.8
2240 Male, age 76, both hemispheres 82.3
2428 Male, age 75, right hemisphere 81.0
2829 Male, age 80, left hemisphere 79.6
2429 Female, age 94, left hemisphere 76.9
2242 Female, age 91, right hemisphere 63.2
2535 Female, age 67, right hemisphere 41.8
Lateral amygdala
nTPM: 69.9
1883 Male, age 76, both hemispheres 97.1
2516 Male, age 75, right hemisphere 93.7
2830 Female, age 67, right hemisphere 68.5
2534 Female, age 94, left hemisphere 60.9
2256 Male, age 80, left hemisphere 50.1
2255 Female, age 91, right hemisphere 49.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 130.4
Samples: 181

Max nTPM: 265.8
Min nTPM: 55.6
Std nTPM: 37.2
Median nTPM: 125.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 265.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 259.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 233.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 228.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 224.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 213.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 205.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 201.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 201.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 196.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 187.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 187.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 185.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 180.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 175.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 174.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 172.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 172.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 171.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 170.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 169.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 169.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 167.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 166.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 166.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 163.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 162.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 161.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 160.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 159.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 158.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 158.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 156.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 156.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 155.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 153.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 153.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 152.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 148.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 148.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 148.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 147.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 146.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 146.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 145.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 144.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 143.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 141.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 140.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 139.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 139.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 139.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 138.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 137.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 137.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 136.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 135.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 135.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 134.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 132.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 132.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 131.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 131.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 130.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 130.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 129.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 129.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 128.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 128.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 128.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 126.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 125.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 125.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 125.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 124.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 124.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 124.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 124.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 123.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 123.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 122.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 122.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 122.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 121.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 121.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 120.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 119.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 119.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 116.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 116.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 116.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 114.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 114.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 113.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 111.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 111.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 110.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 110.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 109.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 109.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 108.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 107.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 102.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 102.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 101.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 101.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 100.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 98.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 94.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 94.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 94.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 94.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 92.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 91.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 90.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 89.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 88.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 88.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 85.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 79.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 76.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 76.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 74.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 71.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 69.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 55.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

154.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 154.7
FF:10151-102I7 76 years, female 154.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
Pig sample Sample description nTPM
Amygdala
nTPM: 66.2
Samples: 4

Max nTPM: 87.0
Min nTPM: 56.4
Sample A Female 87.0
Sample B Female 63.8
Sample C Male 57.5
Sample D Male 56.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 426.6
Samples: 4

Max nTPM: 440.7
Min nTPM: 414.2
Sample A Male 414.2
Sample B Male 440.7
Sample C Female 427.1
Sample D Female 424.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
73513447 Antisense, RP_051121_02_B08, Mouse strain C57BL/6J (56 days, male) 10.4

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