MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.5 nTPM
HPA Brain:93.3 nTPM
GTEx:129.5 nTPM
FANTOM5:142.8 Scaled Tags Per Million
Pig:139.0 nTPM
Mouse:535.4 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.6
2019 Male, age 18, unknown 113.8
2411 Female, age 72, unknown 86.1
1827 Male, age 72, unknown 81.6
2219 Male, age 76, both hemispheres 80.6
2666 Male, age 74, left hemisphere 80.3
1870 Female, age 42, unknown 72.4
1833 Male, age 53, unknown 71.8
2828 Female, age 72, unknown 66.8
1830 Male, age 51, unknown 64.4
2586 Male, age 75, left hemisphere 58.1
Dorsal raphe nucleus
nTPM: 85.7
2298 Female, age 72, unknown 110.6
1828 Male, age 53, unknown 94.1
2750 Male, age 76, both hemispheres 78.0
2047 Male, age 72, unknown 76.6
2016 Female, age 72, unknown 69.3
Inferior colliculus
nTPM: 81.6
2097 Female, age 72, unknown 100.0
1890 Male, age 53, unknown 86.7
1848 Female, age 42, unknown 75.5
2849 Male, age 72, unknown 64.3
Median raphe nucleus
nTPM: 77.0
2220 Male, age 76, midline 77.0
Periaquaductal grey, anterior
nTPM: 81.8
2502 Female, age 75, unknown 94.4
1795 Male, age 51, unknown 75.8
1947 Male, age 18, unknown 75.2
Periaquaductal grey, dorsal
nTPM: 69.8
2850 Male, age 76, both hemispheres 72.9
1840 Male, age 53, unknown 71.0
2464 Female, age 72, unknown 69.4
1831 Male, age 72, unknown 65.8
Periaquaductal grey, lateral
nTPM: 70.4
2272 Male, age 74, both hemispheres 79.9
2053 Male, age 18, unknown 66.4
2140 Male, age 76, both hemispheres 64.8
Pretectal area
nTPM: 93.3
2007 Male, age 72, unknown 122.9
1817 Female, age 42, unknown 121.2
1944 Female, age 72, unknown 118.6
1816 Male, age 51, unknown 113.9
1815 Male, age 53, unknown 95.5
2273 Male, age 74, both hemispheres 90.4
2224 Female, age 72, unknown 90.0
2667 Female, age 75, unknown 80.9
2316 Male, age 76, right hemisphere 73.2
2825 Male, age 18, unknown 61.5
2407 Male, age 75, both hemispheres 58.7
Red nucleus
nTPM: 83.3
1821 Female, age 72, unknown 111.7
2785 Male, age 18, unknown 103.7
2725 Female, age 75, unknown 90.4
2503 Female, age 72, unknown 88.4
1865 Male, age 51, unknown 86.5
2823 Male, age 76, right hemisphere 85.7
1954 Female, age 42, unknown 80.4
1904 Male, age 53, unknown 76.3
2227 Male, age 72, unknown 75.0
2769 Male, age 72, unknown 74.0
2588 Male, age 74, left hemisphere 68.6
2584 Male, age 75, left hemisphere 58.4
Substantia nigra
nTPM: 92.9
2241 Male, age 72, unknown 122.9
1916 Female, age 42, unknown 116.5
1889 Female, age 72, unknown 112.8
1851 Male, age 51, unknown 103.2
1941 Male, age 53, unknown 101.0
2409 Female, age 72, unknown 84.0
2665 Male, age 74, both hemispheres 83.7
2699 Male, age 18, unknown 75.7
2590 Female, age 75, unknown 72.6
2583 Male, age 75, right hemisphere 56.3
Superior colliculus
nTPM: 78.2
2587 Male, age 74, left hemisphere 104.9
2087 Female, age 72, unknown 94.6
2668 Female, age 75, unknown 83.9
2261 Male, age 18, unknown 81.7
1796 Male, age 53, unknown 77.1
1895 Male, age 76, right hemisphere 76.9
1913 Female, age 42, unknown 74.6
1995 Male, age 72, unknown 69.3
1839 Male, age 51, unknown 68.7
2664 Male, age 75, both hemispheres 50.0
Ventral tegmental area
nTPM: 85.0
2410 Female, age 72, unknown 102.5
2218 Male, age 76, both hemispheres 95.3
1915 Female, age 42, unknown 92.0
1942 Male, age 51, unknown 79.2
2223 Female, age 72, unknown 74.3
2021 Male, age 53, unknown 66.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 129.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.5
Samples: 183

Max nTPM: 266.6
Min nTPM: 65.2
Std nTPM: 35.3
Median nTPM: 121.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 266.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 246.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 243.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 230.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 220.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 219.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 213.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 211.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 209.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 202.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 188.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 142.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.8
FF:10158-103A5 76 years, female 142.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 139.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.7
Samples: 4

Max nTPM: 139.1
Min nTPM: 72.2
Sample A Female 139.1
Sample B Female 84.0
Sample C Male 99.4
Sample D Male 72.2
Midbrain
nTPM: 119.0
Samples: 4

Max nTPM: 150.2
Min nTPM: 99.7
Sample A Female 103.8
Sample B Female 99.7
Sample C Male 150.2
Sample D Male 122.1
Periaqueductal gray
nTPM: 85.2
Samples: 3

Max nTPM: 91.7
Min nTPM: 79.8
Sample B Female 84.1
Sample C Male 91.7
Sample D Male 79.8
Superior colliculi
nTPM: 139.0
Samples: 4

Max nTPM: 177.1
Min nTPM: 103.0
Sample A Female 152.0
Sample B Female 103.0
Sample C Male 177.1
Sample D Male 123.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 535.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 535.4
Samples: 4

Max nTPM: 552.9
Min nTPM: 515.9
Sample A Male 552.9
Sample B Male 540.6
Sample C Female 515.9
Sample D Female 532.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
73513447 Antisense, RP_051121_02_B08, Mouse strain C57BL/6J (56 days, male) 9.1

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