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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:159.4 nTPM
HPA Brain:40.1 nTPM
GTEx:159.4 nTPM
FANTOM5:46.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.1
Sample id Sample description nTPM
Amygdala
nTPM: 40.1
2695 Female, age 67, right hemisphere 73.4
2814 Male, age 76, right hemisphere 38.4
2514 Male, age 75, right hemisphere 35.6
2517 Female, age 94, left hemisphere 35.1
1987 Female, age 91, left hemisphere 17.9
Basal amygdala
nTPM: 27.8
2827 Female, age 67, right hemisphere 40.1
2609 Male, age 75, right hemisphere 36.7
1955 Male, age 76, both hemispheres 32.2
2110 Male, age 80, left hemisphere 25.3
2685 Female, age 94, left hemisphere 16.9
2243 Female, age 91, right hemisphere 15.6
Central amygdala
nTPM: 35.2
2826 Female, age 94, left hemisphere 64.3
2515 Male, age 75, right hemisphere 48.4
1905 Male, age 76, both hemispheres 38.3
2239 Male, age 80, left hemisphere 14.4
2701 Female, age 91, right hemisphere 10.6
Corticomedial amygdala
nTPM: 23.3
2428 Male, age 75, right hemisphere 36.3
2240 Male, age 76, both hemispheres 23.7
2429 Female, age 94, left hemisphere 22.9
2829 Male, age 80, left hemisphere 22.3
2535 Female, age 67, right hemisphere 20.2
2242 Female, age 91, right hemisphere 14.3
Lateral amygdala
nTPM: 39.6
2516 Male, age 75, right hemisphere 66.1
2534 Female, age 94, left hemisphere 65.0
2830 Female, age 67, right hemisphere 50.9
1883 Male, age 76, both hemispheres 29.7
2255 Female, age 91, right hemisphere 13.8
2256 Male, age 80, left hemisphere 12.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 159.4
Samples: 181

Max nTPM: 783.1
Min nTPM: 34.6
Std nTPM: 113.0
Median nTPM: 126.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 783.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 657.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 535.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 534.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 450.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 442.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 432.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 430.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 399.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 369.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 366.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 349.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 347.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 335.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 335.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 306.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 302.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 301.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 301.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 300.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 280.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 272.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 268.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 265.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 261.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 260.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 256.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 252.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 235.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 234.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 232.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 229.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 220.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 211.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 211.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 209.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 207.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 206.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 204.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 203.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 201.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 199.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 199.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 197.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 188.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 184.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 178.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 176.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 175.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 172.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 168.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 167.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 167.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 165.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 163.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 163.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 163.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 162.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 162.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 161.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 160.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 160.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 158.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 157.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 154.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 154.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 153.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 152.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 148.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 148.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 145.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 142.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 140.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 138.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 138.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 138.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 136.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 135.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 133.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 132.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 132.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 130.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 128.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 126.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 125.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 124.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 124.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 122.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 119.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 115.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 114.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 112.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 111.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 111.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 111.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 110.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 109.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 107.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 105.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 102.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 101.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 99.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 94.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 93.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 93.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 91.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 91.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 90.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 89.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 89.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 87.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 86.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 84.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 83.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 83.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 83.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 82.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 78.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 77.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 73.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 72.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 70.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 68.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 66.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 65.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 63.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 63.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 62.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 62.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 62.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 62.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 60.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 58.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 56.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 52.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 51.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 48.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 43.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 43.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 41.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 36.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 34.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.2
FF:10151-102I7 76 years, female 46.2

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