MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:231.7 nTPM
HPA Brain:57.4 nTPM
GTEx:231.7 nTPM
FANTOM5:59.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
2019 Male, age 18, unknown 44.9
2828 Female, age 72, unknown 30.2
1870 Female, age 42, unknown 27.1
2666 Male, age 74, left hemisphere 24.0
1833 Male, age 53, unknown 22.9
1830 Male, age 51, unknown 22.0
2411 Female, age 72, unknown 20.5
1827 Male, age 72, unknown 19.2
2219 Male, age 76, both hemispheres 9.8
2586 Male, age 75, left hemisphere 1.9
Dorsal raphe nucleus
nTPM: 35.1
2298 Female, age 72, unknown 50.0
1828 Male, age 53, unknown 44.1
2750 Male, age 76, both hemispheres 32.8
2016 Female, age 72, unknown 30.8
2047 Male, age 72, unknown 17.5
Inferior colliculus
nTPM: 29.0
2097 Female, age 72, unknown 44.9
1890 Male, age 53, unknown 29.6
1848 Female, age 42, unknown 24.2
2849 Male, age 72, unknown 17.3
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 35.1
2502 Female, age 75, unknown 53.5
1795 Male, age 51, unknown 34.2
1947 Male, age 18, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 39.1
2850 Male, age 76, both hemispheres 87.0
1831 Male, age 72, unknown 28.2
2464 Female, age 72, unknown 25.3
1840 Male, age 53, unknown 15.7
Periaquaductal grey, lateral
nTPM: 57.4
2272 Male, age 74, both hemispheres 72.2
2140 Male, age 76, both hemispheres 70.9
2053 Male, age 18, unknown 29.1
Pretectal area
nTPM: 30.6
2273 Male, age 74, both hemispheres 61.9
1817 Female, age 42, unknown 44.4
2316 Male, age 76, right hemisphere 40.3
2007 Male, age 72, unknown 32.7
2224 Female, age 72, unknown 30.6
2667 Female, age 75, unknown 29.6
1944 Female, age 72, unknown 25.5
1815 Male, age 53, unknown 25.1
2825 Male, age 18, unknown 24.4
1816 Male, age 51, unknown 19.9
2407 Male, age 75, both hemispheres 2.5
Red nucleus
nTPM: 37.2
1954 Female, age 42, unknown 53.3
2503 Female, age 72, unknown 50.9
1821 Female, age 72, unknown 50.1
2227 Male, age 72, unknown 42.4
1904 Male, age 53, unknown 41.6
2785 Male, age 18, unknown 40.8
2769 Male, age 72, unknown 39.3
2823 Male, age 76, right hemisphere 35.6
1865 Male, age 51, unknown 33.0
2588 Male, age 74, left hemisphere 29.8
2725 Female, age 75, unknown 23.1
2584 Male, age 75, left hemisphere 6.5
Substantia nigra
nTPM: 24.2
2665 Male, age 74, both hemispheres 56.1
1889 Female, age 72, unknown 30.2
1916 Female, age 42, unknown 30.1
2241 Male, age 72, unknown 28.7
1851 Male, age 51, unknown 26.7
2590 Female, age 75, unknown 20.2
2699 Male, age 18, unknown 18.4
2409 Female, age 72, unknown 13.6
1941 Male, age 53, unknown 13.4
2583 Male, age 75, right hemisphere 4.7
Superior colliculus
nTPM: 26.0
2587 Male, age 74, left hemisphere 53.1
1913 Female, age 42, unknown 30.1
2261 Male, age 18, unknown 30.1
1995 Male, age 72, unknown 28.2
1796 Male, age 53, unknown 25.0
1839 Male, age 51, unknown 24.7
2087 Female, age 72, unknown 24.4
1895 Male, age 76, right hemisphere 23.8
2668 Female, age 75, unknown 17.5
2664 Male, age 75, both hemispheres 3.7
Ventral tegmental area
nTPM: 28.7
2218 Male, age 76, both hemispheres 37.2
2021 Male, age 53, unknown 35.8
1915 Female, age 42, unknown 29.9
2410 Female, age 72, unknown 24.3
2223 Female, age 72, unknown 24.2
1942 Male, age 51, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 231.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 231.7
Samples: 183

Max nTPM: 1186.0
Min nTPM: 51.7
Std nTPM: 155.6
Median nTPM: 193.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1186.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 910.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 902.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 755.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 621.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 601.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 592.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 581.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 551.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 503.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 500.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.6
FF:10158-103A5 76 years, female 59.6

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