A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
67.8
nTPM
Monaco:
166.6
nTPM
Schmiedel:
71.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.8
HPA sample
nTPM
Classical monocyte nTPM: 47.4
Samples: 6
Max nTPM: 56.6
Min nTPM: 38.3
P10809_1003
48.7
P10809_1020
56.6
P10809_1039
54.1
P10809_1058
39.5
P10809_1080
47.2
P10809_1107
38.3
Intermediate monocyte nTPM: 64.6
Samples: 6
Max nTPM: 97.2
Min nTPM: 46.3
P10809_1004
61.5
P10809_1023
46.3
P10809_1042
97.2
P10809_1061
85.9
P10809_1081
48.2
P10809_1108
48.8
Non-classical monocyte nTPM: 67.7
Samples: 5
Max nTPM: 113.2
Min nTPM: 46.3
P10809_1005
57.9
P10809_1053
73.0
P10809_1072
113.2
P10809_1082
48.3
P10809_1109
46.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.6
Monaco sample
nTPM
Classical monocyte nTPM: 138.6
Samples: 4
Max nTPM: 152.7
Min nTPM: 111.5
RHH5313_R3680
138.4
RHH5221_R3593
151.9
RHH5250_R3622
152.7
RHH5279_R3651
111.5
Intermediate monocyte nTPM: 129.7
Samples: 4
Max nTPM: 143.0
Min nTPM: 117.2
RHH5314_R3681
122.7
RHH5222_R3594
143.0
RHH5251_R3623
117.2
RHH5280_R3652
135.8
Non-classical monocyte nTPM: 166.6
Samples: 4
Max nTPM: 194.5
Min nTPM: 142.4
RHH5315_R3682
142.4
RHH5223_R3595
194.5
RHH5252_R3624
162.7
RHH5281_R3653
166.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.6
Schmiedel sample id
TPM
Classical monocyte TPM: 39.9
Samples: 91
Max TPM: 57.4
Min TPM: 24.4
MONOCYTES_1
57.4
MONOCYTES_2
55.1
MONOCYTES_3
52.6
MONOCYTES_4
52.2
MONOCYTES_5
51.8
MONOCYTES_6
51.7
MONOCYTES_7
51.1
MONOCYTES_8
51.0
MONOCYTES_9
50.3
MONOCYTES_10
49.7
MONOCYTES_11
49.5
MONOCYTES_12
49.1
MONOCYTES_13
49.0
MONOCYTES_14
48.3
MONOCYTES_15
46.7
MONOCYTES_16
46.5
MONOCYTES_17
46.3
MONOCYTES_18
46.1
MONOCYTES_19
46.0
MONOCYTES_20
45.5
MONOCYTES_21
45.4
MONOCYTES_22
45.0
MONOCYTES_23
45.0
MONOCYTES_24
44.8
MONOCYTES_25
44.5
MONOCYTES_26
44.4
MONOCYTES_27
44.2
MONOCYTES_28
44.0
MONOCYTES_29
43.5
MONOCYTES_30
43.5
MONOCYTES_31
43.4
MONOCYTES_32
43.4
MONOCYTES_33
43.1
MONOCYTES_34
43.0
MONOCYTES_35
42.9
MONOCYTES_36
42.3
MONOCYTES_37
41.8
MONOCYTES_38
41.5
MONOCYTES_39
41.1
MONOCYTES_40
41.0
MONOCYTES_41
40.6
MONOCYTES_42
40.4
MONOCYTES_43
40.3
MONOCYTES_44
40.1
MONOCYTES_45
40.1
MONOCYTES_46
40.0
MONOCYTES_47
39.5
MONOCYTES_48
39.5
MONOCYTES_49
39.4
MONOCYTES_50
39.4
MONOCYTES_51
39.0
MONOCYTES_52
39.0
MONOCYTES_53
38.8
MONOCYTES_54
38.7
MONOCYTES_55
38.3
MONOCYTES_56
38.0
MONOCYTES_57
38.0
MONOCYTES_58
38.0
MONOCYTES_59
37.7
MONOCYTES_60
37.2
MONOCYTES_61
36.3
MONOCYTES_62
35.9
MONOCYTES_63
35.8
MONOCYTES_64
35.8
MONOCYTES_65
35.2
MONOCYTES_66
34.7
MONOCYTES_67
33.9
MONOCYTES_68
33.4
MONOCYTES_69
33.4
MONOCYTES_70
33.3
MONOCYTES_71
33.0
MONOCYTES_72
32.9
MONOCYTES_73
32.8
MONOCYTES_74
32.4
MONOCYTES_75
31.9
MONOCYTES_76
31.9
MONOCYTES_77
31.8
MONOCYTES_78
31.4
MONOCYTES_79
31.4
MONOCYTES_80
31.3
MONOCYTES_81
31.3
MONOCYTES_82
31.1
MONOCYTES_83
31.1
MONOCYTES_84
30.3
MONOCYTES_85
29.8
MONOCYTES_86
28.2
MONOCYTES_87
27.1
MONOCYTES_88
26.8
MONOCYTES_89
26.3
MONOCYTES_90
26.1
MONOCYTES_91
24.4
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Non-classical monocyte TPM: 71.6
Samples: 90
Max TPM: 116.4
Min TPM: 50.8
M2_1
116.4
M2_2
108.9
M2_3
102.2
M2_4
99.9
M2_5
99.3
M2_6
99.1
M2_7
98.1
M2_8
95.7
M2_9
94.0
M2_10
93.4
M2_11
92.3
M2_12
87.7
M2_13
86.5
M2_14
85.9
M2_15
85.7
M2_16
82.9
M2_17
82.6
M2_18
82.1
M2_19
81.7
M2_20
80.2
M2_21
77.2
M2_22
76.6
M2_23
76.4
M2_24
76.2
M2_25
75.4
M2_26
75.4
M2_27
74.8
M2_28
74.5
M2_29
74.2
M2_30
73.7
M2_31
73.6
M2_32
73.5
M2_33
73.4
M2_34
73.1
M2_35
73.1
M2_36
72.9
M2_37
72.7
M2_38
72.4
M2_39
72.3
M2_40
72.2
M2_41
71.4
M2_42
71.1
M2_43
71.1
M2_44
70.4
M2_45
69.8
M2_46
69.6
M2_47
69.4
M2_48
69.4
M2_49
68.4
M2_50
68.1
M2_51
68.1
M2_52
67.7
M2_53
67.5
M2_54
67.2
M2_55
66.7
M2_56
66.6
M2_57
66.1
M2_58
65.8
M2_59
65.1
M2_60
64.8
M2_61
64.3
M2_62
64.3
M2_63
63.1
M2_64
62.8
M2_65
62.7
M2_66
62.1
M2_67
61.4
M2_68
60.8
M2_69
60.8
M2_70
60.5
M2_71
59.5
M2_72
59.2
M2_73
58.9
M2_74
58.8
M2_75
58.8
M2_76
57.9
M2_77
57.6
M2_78
57.1
M2_79
56.9
M2_80
56.6
M2_81
56.5
M2_82
56.4
M2_83
55.9
M2_84
54.8
M2_85
54.0
M2_86
53.1
M2_87
52.9
M2_88
52.7
M2_89
50.9
M2_90
50.8
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