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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:26.8 nTPM
HPA Brain:80.3 nTPM
GTEx:26.8 nTPM
FANTOM5:91.2 Scaled Tags Per Million
Pig:112.2 nTPM
Mouse:70.2 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.3
Sample id Sample description nTPM
Amygdala
nTPM: 35.7
1987 Female, age 91, left hemisphere 66.5
2517 Female, age 94, left hemisphere 54.1
2514 Male, age 75, right hemisphere 30.7
2695 Female, age 67, right hemisphere 13.9
2814 Male, age 76, right hemisphere 13.3
Basal amygdala
nTPM: 80.3
2243 Female, age 91, right hemisphere 151.3
2685 Female, age 94, left hemisphere 91.0
2110 Male, age 80, left hemisphere 83.1
2827 Female, age 67, right hemisphere 62.5
1955 Male, age 76, both hemispheres 60.1
2609 Male, age 75, right hemisphere 33.7
Central amygdala
nTPM: 52.3
2239 Male, age 80, left hemisphere 92.9
2826 Female, age 94, left hemisphere 67.6
2701 Female, age 91, right hemisphere 53.9
2515 Male, age 75, right hemisphere 33.1
1905 Male, age 76, both hemispheres 13.9
Corticomedial amygdala
nTPM: 78.6
2242 Female, age 91, right hemisphere 112.7
2829 Male, age 80, left hemisphere 104.4
2429 Female, age 94, left hemisphere 88.4
2535 Female, age 67, right hemisphere 66.8
2240 Male, age 76, both hemispheres 66.4
2428 Male, age 75, right hemisphere 32.8
Lateral amygdala
nTPM: 55.4
2534 Female, age 94, left hemisphere 96.5
2256 Male, age 80, left hemisphere 78.9
2255 Female, age 91, right hemisphere 63.9
1883 Male, age 76, both hemispheres 37.2
2830 Female, age 67, right hemisphere 33.0
2516 Male, age 75, right hemisphere 22.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 26.8
Samples: 181

Max nTPM: 121.8
Min nTPM: 2.6
Std nTPM: 19.8
Median nTPM: 22.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 121.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 96.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 83.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 73.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 72.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 67.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 65.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 62.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 61.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 59.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 55.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 54.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 47.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 47.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 47.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 45.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 44.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 44.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 43.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 43.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 43.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 41.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 41.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 40.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 40.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 39.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 39.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 39.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 38.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 36.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 34.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 34.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 34.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 33.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 32.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 32.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 32.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 31.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 31.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 31.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 31.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 31.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 30.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 30.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 29.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 28.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 28.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 28.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 27.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 27.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 27.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 27.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 27.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 27.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 26.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 26.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 26.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 26.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 26.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 26.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 25.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 25.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 24.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 24.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 24.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 23.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 23.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 23.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 23.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 23.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 23.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 22.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 22.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 22.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 22.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 22.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 22.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 21.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 20.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 20.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 20.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 20.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 20.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 20.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 19.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 19.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 19.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 19.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 19.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 19.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 19.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 18.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 18.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 18.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 18.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 17.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 17.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 16.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 16.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 16.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 16.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 15.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 15.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 14.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 14.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 14.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 13.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 13.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 13.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 13.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 13.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 13.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 12.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 12.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 12.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 12.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 12.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 12.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 11.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 11.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 11.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 11.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 11.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 10.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 10.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 10.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 10.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 10.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 10.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 10.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 10.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 10.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 9.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 9.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 9.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 8.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 8.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 8.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 8.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 7.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 7.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 7.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 6.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 6.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 5.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 4.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 4.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 4.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 91.2
FF:10151-102I7 76 years, female 91.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.2
Pig sample Sample description nTPM
Amygdala
nTPM: 112.2
Samples: 4

Max nTPM: 179.4
Min nTPM: 57.0
Sample A Female 179.4
Sample B Female 57.0
Sample C Male 91.9
Sample D Male 120.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 70.2
Samples: 4

Max nTPM: 79.4
Min nTPM: 58.4
Sample A Male 79.4
Sample B Male 70.3
Sample C Female 58.4
Sample D Female 72.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.5
68797529 Antisense, RP_050210_02_E10, Mouse strain C57BL/6J (56 days, male) 15.7
71064082 Antisense, RP_050725_03_D01, Mouse strain C57BL/6J (56 days, male) 8.9
73512195 Antisense, RP_050712_03_D11, Mouse strain C57BL/6J (56 days, male) 3.8
79762688 Antisense, RP_071204_04_D08, Mouse strain C57BL/6J (56 days, male) 1.8

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