A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
8.8
nTPM
Schmiedel:
26.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Memory B-cell nTPM: 0.5
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1017
0.3
P10809_1025
0.4
P10809_1044
1.0
P10809_1063
1.2
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 0.9
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1011
0.8
P10809_1029
1.6
P10809_1048
0.0
P10809_1067
0.4
P10809_1091
1.3
P10809_1104
1.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 6.8
Samples: 4
Max nTPM: 12.6
Min nTPM: 2.2
RHH5310_R3677
2.2
RHH5218_R3590
12.6
RHH5247_R3619
7.5
RHH5276_R3648
4.7
Naive B-cell nTPM: 8.8
Samples: 4
Max nTPM: 15.6
Min nTPM: 1.9
RHH5308_R3675
15.6
RHH5216_R3588
1.9
RHH5245_R3617
7.0
RHH5274_R3646
10.8
Non-switched memory B-cell nTPM: 3.9
Samples: 4
Max nTPM: 4.9
Min nTPM: 1.8
RHH5309_R3676
1.8
RHH5217_R3589
4.5
RHH5246_R3618
4.5
RHH5275_R3647
4.9
Plasmablast nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 0.5
Samples: 4
Max nTPM: 1.1
Min nTPM: 0.0
RHH5311_R3678
0.8
RHH5219_R3591
0.0
RHH5248_R3620
0.0
RHH5277_R3649
1.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.6
Schmiedel sample id
TPM
Naive B-cell TPM: 26.6
Samples: 91
Max TPM: 56.6
Min TPM: 7.2
B_CELL_NAIVE_1
56.6
B_CELL_NAIVE_2
56.6
B_CELL_NAIVE_3
49.3
B_CELL_NAIVE_4
48.7
B_CELL_NAIVE_5
45.5
B_CELL_NAIVE_6
44.9
B_CELL_NAIVE_7
44.1
B_CELL_NAIVE_8
43.3
B_CELL_NAIVE_9
42.6
B_CELL_NAIVE_10
41.4
B_CELL_NAIVE_11
39.9
B_CELL_NAIVE_12
39.8
B_CELL_NAIVE_13
38.1
B_CELL_NAIVE_14
37.6
B_CELL_NAIVE_15
37.5
B_CELL_NAIVE_16
37.5
B_CELL_NAIVE_17
36.8
B_CELL_NAIVE_18
36.6
B_CELL_NAIVE_19
35.9
B_CELL_NAIVE_20
34.7
B_CELL_NAIVE_21
34.6
B_CELL_NAIVE_22
33.9
B_CELL_NAIVE_23
33.7
B_CELL_NAIVE_24
33.5
B_CELL_NAIVE_25
33.0
B_CELL_NAIVE_26
32.1
B_CELL_NAIVE_27
31.1
B_CELL_NAIVE_28
30.1
B_CELL_NAIVE_29
30.0
B_CELL_NAIVE_30
29.8
B_CELL_NAIVE_31
29.4
B_CELL_NAIVE_32
29.4
B_CELL_NAIVE_33
29.3
B_CELL_NAIVE_34
28.9
B_CELL_NAIVE_35
28.6
B_CELL_NAIVE_36
28.4
B_CELL_NAIVE_37
27.8
B_CELL_NAIVE_38
27.5
B_CELL_NAIVE_39
27.1
B_CELL_NAIVE_40
26.9
B_CELL_NAIVE_41
26.3
B_CELL_NAIVE_42
26.2
B_CELL_NAIVE_43
25.9
B_CELL_NAIVE_44
25.8
B_CELL_NAIVE_45
25.7
B_CELL_NAIVE_46
25.1
B_CELL_NAIVE_47
24.9
B_CELL_NAIVE_48
24.3
B_CELL_NAIVE_49
23.6
B_CELL_NAIVE_50
23.5
B_CELL_NAIVE_51
23.1
B_CELL_NAIVE_52
23.0
B_CELL_NAIVE_53
22.8
B_CELL_NAIVE_54
22.8
B_CELL_NAIVE_55
22.7
B_CELL_NAIVE_56
22.3
B_CELL_NAIVE_57
22.1
B_CELL_NAIVE_58
22.0
B_CELL_NAIVE_59
22.0
B_CELL_NAIVE_60
20.3
B_CELL_NAIVE_61
20.3
B_CELL_NAIVE_62
20.2
B_CELL_NAIVE_63
19.5
B_CELL_NAIVE_64
19.4
B_CELL_NAIVE_65
18.9
B_CELL_NAIVE_66
18.9
B_CELL_NAIVE_67
18.5
B_CELL_NAIVE_68
18.0
B_CELL_NAIVE_69
17.9
B_CELL_NAIVE_70
17.8
B_CELL_NAIVE_71
17.0
B_CELL_NAIVE_72
16.6
B_CELL_NAIVE_73
16.3
B_CELL_NAIVE_74
16.2
B_CELL_NAIVE_75
16.1
B_CELL_NAIVE_76
15.8
B_CELL_NAIVE_77
15.8
B_CELL_NAIVE_78
15.8
B_CELL_NAIVE_79
15.7
B_CELL_NAIVE_80
15.4
B_CELL_NAIVE_81
15.0
B_CELL_NAIVE_82
14.9
B_CELL_NAIVE_83
14.9
B_CELL_NAIVE_84
14.9
B_CELL_NAIVE_85
14.6
B_CELL_NAIVE_86
14.5
B_CELL_NAIVE_87
14.2
B_CELL_NAIVE_88
13.9
B_CELL_NAIVE_89
10.6
B_CELL_NAIVE_90
10.4
B_CELL_NAIVE_91
7.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
