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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:157.4 nTPM
HPA Brain:137.3 nTPM
GTEx:157.4 nTPM
FANTOM5:240.0 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:28.8 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
Sample id Sample description nTPM
Amygdala
nTPM: 137.3
2514 Male, age 75, right hemisphere 160.0
1987 Female, age 91, left hemisphere 157.2
2814 Male, age 76, right hemisphere 141.7
2517 Female, age 94, left hemisphere 124.5
2695 Female, age 67, right hemisphere 103.0
Basal amygdala
nTPM: 123.6
2110 Male, age 80, left hemisphere 149.4
2243 Female, age 91, right hemisphere 136.9
2609 Male, age 75, right hemisphere 131.2
1955 Male, age 76, both hemispheres 127.2
2685 Female, age 94, left hemisphere 107.5
2827 Female, age 67, right hemisphere 89.8
Central amygdala
nTPM: 132.8
2239 Male, age 80, left hemisphere 149.1
2515 Male, age 75, right hemisphere 136.1
2701 Female, age 91, right hemisphere 132.8
1905 Male, age 76, both hemispheres 130.6
2826 Female, age 94, left hemisphere 115.2
Corticomedial amygdala
nTPM: 133.0
2829 Male, age 80, left hemisphere 157.8
2242 Female, age 91, right hemisphere 142.7
2240 Male, age 76, both hemispheres 133.2
2428 Male, age 75, right hemisphere 129.3
2429 Female, age 94, left hemisphere 129.1
2535 Female, age 67, right hemisphere 106.0
Lateral amygdala
nTPM: 122.7
2516 Male, age 75, right hemisphere 139.5
2534 Female, age 94, left hemisphere 136.0
2255 Female, age 91, right hemisphere 133.1
1883 Male, age 76, both hemispheres 127.3
2256 Male, age 80, left hemisphere 110.1
2830 Female, age 67, right hemisphere 90.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 157.4
Samples: 181

Max nTPM: 296.1
Min nTPM: 81.3
Std nTPM: 41.1
Median nTPM: 153.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 296.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 294.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 269.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 262.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 261.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 255.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 252.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 241.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 235.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 233.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 232.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 222.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 221.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 220.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 217.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 214.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 213.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 212.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 210.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 209.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 204.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 201.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 199.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 198.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 197.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 196.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 196.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 195.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 194.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 192.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 191.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 190.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 188.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 186.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 185.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 184.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 183.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 183.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 182.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 181.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 178.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 177.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 176.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 176.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 174.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 174.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 173.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 172.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 172.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 171.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 170.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 170.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 170.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 168.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 167.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 167.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 166.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 166.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 165.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 165.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 163.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 163.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 163.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 162.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 161.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 161.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 160.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 157.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 157.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 157.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 157.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 157.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 156.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 156.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 155.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 154.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 150.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 150.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 149.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 148.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 147.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 147.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 147.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 147.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 145.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 145.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 145.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 144.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 144.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 143.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 141.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 141.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 140.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 140.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 137.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 136.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 135.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 135.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 134.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 132.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 131.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 131.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 131.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 130.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 129.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 129.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 128.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 128.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 125.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 124.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 123.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 121.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 119.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 117.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 117.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 117.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 115.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 113.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 112.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 111.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 110.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 109.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 109.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 107.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 107.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 106.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 106.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 102.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 102.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 101.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 99.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 98.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 98.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 91.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 89.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 81.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 240.0
FF:10151-102I7 76 years, female 240.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.6
Pig sample Sample description nTPM
Amygdala
nTPM: 49.6
Samples: 4

Max nTPM: 63.2
Min nTPM: 42.6
Sample A Female 63.2
Sample B Female 42.6
Sample C Male 43.2
Sample D Male 49.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.3
Sample A Male 32.3
Sample B Male 29.2
Sample C Female 26.3
Sample D Female 27.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.9
100144105 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 3.9
112196711 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 2.7

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