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  • TSC22D4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:632.1 nTPM
HPA Brain:523.5 nTPM
GTEx:632.1 nTPM
FANTOM5:441.2 Scaled Tags Per Million
Pig:80.1 nTPM
Mouse:203.4 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

523.5
Sample id Sample description nTPM
Amygdala
nTPM: 519.8
2695 Female, age 67, right hemisphere 734.0
2814 Male, age 76, right hemisphere 606.5
2517 Female, age 94, left hemisphere 458.7
2514 Male, age 75, right hemisphere 405.7
1987 Female, age 91, left hemisphere 394.0
Basal amygdala
nTPM: 411.9
2609 Male, age 75, right hemisphere 573.5
1955 Male, age 76, both hemispheres 452.6
2827 Female, age 67, right hemisphere 386.0
2110 Male, age 80, left hemisphere 372.8
2685 Female, age 94, left hemisphere 368.1
2243 Female, age 91, right hemisphere 318.3
Central amygdala
nTPM: 523.5
2826 Female, age 94, left hemisphere 666.2
1905 Male, age 76, both hemispheres 575.4
2515 Male, age 75, right hemisphere 545.4
2239 Male, age 80, left hemisphere 436.8
2701 Female, age 91, right hemisphere 393.9
Corticomedial amygdala
nTPM: 339.4
2428 Male, age 75, right hemisphere 432.5
2829 Male, age 80, left hemisphere 401.0
2240 Male, age 76, both hemispheres 331.4
2535 Female, age 67, right hemisphere 293.7
2429 Female, age 94, left hemisphere 290.6
2242 Female, age 91, right hemisphere 287.3
Lateral amygdala
nTPM: 495.8
2516 Male, age 75, right hemisphere 564.3
2256 Male, age 80, left hemisphere 534.7
1883 Male, age 76, both hemispheres 508.0
2830 Female, age 67, right hemisphere 486.0
2534 Female, age 94, left hemisphere 471.2
2255 Female, age 91, right hemisphere 410.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

632.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 632.1
Samples: 181

Max nTPM: 1374.0
Min nTPM: 237.8
Std nTPM: 223.4
Median nTPM: 601.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1374.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1257.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1231.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1185.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1139.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1122.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1118.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1109.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1108.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1034.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1025.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1013.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 994.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 975.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 973.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 968.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 954.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 950.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 945.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 937.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 928.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 914.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 910.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 897.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 891.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 880.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 874.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 863.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 855.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 854.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 841.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 830.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 823.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 821.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 807.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 799.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 799.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 789.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 786.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 785.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 784.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 778.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 777.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 772.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 770.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 765.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 764.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 750.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 748.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 748.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 746.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 743.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 741.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 736.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 728.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 728.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 727.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 719.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 717.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 714.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 711.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 708.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 699.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 692.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 690.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 679.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 672.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 671.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 667.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 667.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 663.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 662.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 656.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 655.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 647.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 644.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 644.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 637.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 637.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 636.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 635.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 635.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 628.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 628.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 628.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 627.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 625.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 615.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 612.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 611.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 601.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 600.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 598.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 596.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 592.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 592.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 591.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 584.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 578.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 577.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 573.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 571.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 567.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 566.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 566.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 560.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 559.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 558.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 555.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 550.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 544.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 542.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 541.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 541.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 532.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 531.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 530.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 525.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 521.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 520.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 501.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 500.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 496.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 496.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 490.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 487.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 482.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 476.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 475.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 471.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 470.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 469.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 469.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 460.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 459.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 453.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 450.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 449.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 449.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 447.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 445.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 443.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 442.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 433.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 433.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 426.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 422.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 421.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 417.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 416.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 416.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 405.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 399.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 394.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 391.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 391.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 389.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 387.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 381.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 376.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 376.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 374.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 360.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 359.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 356.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 352.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 352.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 350.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 350.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 348.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 348.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 347.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 335.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 334.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 324.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 314.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 297.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 277.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 267.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 245.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 237.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 441.2
FF:10151-102I7 76 years, female 441.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.1
Pig sample Sample description nTPM
Amygdala
nTPM: 80.2
Samples: 4

Max nTPM: 101.9
Min nTPM: 60.7
Sample A Female 79.5
Sample B Female 101.9
Sample C Male 78.5
Sample D Male 60.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 203.4
Samples: 4

Max nTPM: 283.9
Min nTPM: 166.2
Sample A Male 167.4
Sample B Male 166.2
Sample C Female 283.9
Sample D Female 196.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 4.3
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 2.9
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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