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  • TSC22D4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:767.3 nTPM
HPA Brain:634.2 nTPM
GTEx:767.3 nTPM
FANTOM5:686.3 Scaled Tags Per Million
Pig:258.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

634.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 537.1
1981 Female, age 72, midline 621.4
2194 Female, age 79, both hemispheres 559.5
2048 Male, age 55, midline 541.9
2816 Male, age 47, midline 490.8
2565 Male, age 75, midline 472.0
Cervical spinal cord, dorsal horn
nTPM: 514.0
2173 Female, age 72, unknown 767.7
1877 Male, age 55, unknown 505.7
2296 Male, age 66, both hemispheres 502.8
2721 Male, age 90, both hemispheres 455.0
2069 Male, age 47, both hemispheres 446.0
2297 Male, age 75, both hemispheres 406.7
Cervical spinal cord, ventral horn
nTPM: 634.2
2295 Male, age 66, both hemispheres 746.1
2809 Male, age 90, both hemispheres 718.2
2068 Male, age 55, unknown 612.1
2480 Male, age 75, both hemispheres 609.3
2098 Female, age 72, unknown 590.1
2820 Female, age 79, both hemispheres 529.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 767.3
Samples: 204

Max nTPM: 1733.4
Min nTPM: 204.7
Std nTPM: 269.8
Median nTPM: 731.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1733.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1556.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1554.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1484.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1454.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1414.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1370.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1355.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1336.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1283.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1265.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1264.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1227.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1225.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1206.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1180.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1169.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1152.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1145.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1136.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1127.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1125.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1107.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1092.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1087.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1064.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1059.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1057.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1039.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1034.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1030.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1030.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1028.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1020.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1017.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 990.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 989.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 989.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 986.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 982.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 976.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 964.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 962.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 958.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 949.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 945.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 944.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 942.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 941.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 936.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 933.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 931.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 925.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 919.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 910.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 905.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 905.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 899.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 895.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 878.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 874.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 868.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 867.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 867.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 854.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 845.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 838.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 836.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 832.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 820.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 810.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 797.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 793.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 792.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 790.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 790.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 788.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 786.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 782.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 781.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 779.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 778.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 776.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 773.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 772.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 766.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 765.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 764.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 755.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 749.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 747.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 746.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 744.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 741.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 739.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 739.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 738.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 736.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 734.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 734.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 732.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 732.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 729.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 728.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 726.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 725.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 725.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 717.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 716.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 716.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 714.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 714.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 714.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 707.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 706.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 703.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 700.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 700.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 698.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 697.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 697.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 695.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 688.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 683.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 682.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 681.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 680.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 680.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 673.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 672.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 654.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 653.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 652.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 646.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 640.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 639.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 639.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 636.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 635.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 633.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 630.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 629.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 628.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 623.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 617.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 612.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 607.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 605.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 602.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 602.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 600.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 599.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 599.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 595.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 590.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 588.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 585.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 583.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 576.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 572.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 571.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 564.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 558.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 550.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 537.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 531.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 530.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 526.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 526.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 523.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 518.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 514.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 513.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 512.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 508.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 493.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 488.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 480.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 474.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 472.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 471.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 466.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 452.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 451.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 446.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 442.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 430.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 430.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 422.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 421.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 411.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 406.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 388.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 369.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 362.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 356.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 340.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 320.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 318.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 310.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 273.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 254.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 238.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 204.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

686.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 686.3
FF:10181-103D1 60 years, female 878.6
FF:10159-103A6 76 years, female 494.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 199.8
Samples: 4

Max nTPM: 211.5
Min nTPM: 190.6
Sample A Female 190.6
Sample B Female 211.5
Sample C Male 202.1
Sample D Male 195.1
Ventral spinal cord
nTPM: 258.1
Samples: 4

Max nTPM: 270.9
Min nTPM: 247.8
Sample A Female 251.2
Sample B Female 270.9
Sample C Male 247.8
Sample D Male 262.5

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