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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:436.8 nTPM
HPA Brain:218.0 nTPM
GTEx:436.8 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:12.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 183.0
2194 Female, age 79, both hemispheres 242.6
2816 Male, age 47, midline 216.0
1981 Female, age 72, midline 168.8
2048 Male, age 55, midline 155.7
2565 Male, age 75, midline 131.6
Cervical spinal cord, dorsal horn
nTPM: 197.4
2296 Male, age 66, both hemispheres 313.8
2173 Female, age 72, unknown 222.2
1877 Male, age 55, unknown 192.5
2069 Male, age 47, both hemispheres 177.6
2721 Male, age 90, both hemispheres 140.8
2297 Male, age 75, both hemispheres 137.4
Cervical spinal cord, ventral horn
nTPM: 218.0
2820 Female, age 79, both hemispheres 335.0
2068 Male, age 55, unknown 333.0
2480 Male, age 75, both hemispheres 166.0
2809 Male, age 90, both hemispheres 163.6
2295 Male, age 66, both hemispheres 159.2
2098 Female, age 72, unknown 151.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

436.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 436.8
Samples: 204

Max nTPM: 1084.5
Min nTPM: 82.6
Std nTPM: 183.0
Median nTPM: 438.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1084.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 982.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 930.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 873.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 820.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 804.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 802.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 788.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 765.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 753.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 749.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 740.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 739.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 733.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 707.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 702.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 696.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 682.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 680.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 680.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 666.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 662.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 657.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 650.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 641.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 636.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 634.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 633.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 632.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 628.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 622.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 620.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 620.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 615.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 611.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 610.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 606.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 600.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 597.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 589.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 574.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 574.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 573.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 564.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 550.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 550.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 550.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 547.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 544.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 542.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 541.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 540.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 539.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 539.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 539.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 533.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 533.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 529.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 529.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 522.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 520.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 519.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 517.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 516.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 515.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 515.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 512.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 507.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 504.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 503.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 503.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 499.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 497.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 495.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 492.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 487.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 484.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 483.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 480.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 479.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 479.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 478.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 476.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 473.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 464.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 461.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 460.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 459.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 455.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 450.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 450.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 449.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 449.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 448.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 446.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 445.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 443.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 441.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 439.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 439.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 439.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 439.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 438.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 436.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 435.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 429.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 422.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 419.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 418.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 417.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 415.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 412.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 410.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 409.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 409.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 406.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 405.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 404.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 400.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 394.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 394.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 387.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 386.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 386.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 385.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 383.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 382.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 381.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 375.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 372.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 371.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 371.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 371.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 368.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 368.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 365.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 364.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 363.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 362.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 359.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 359.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 359.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 350.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 345.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 342.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 337.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 335.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 333.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 332.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 321.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 318.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 317.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 315.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 300.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 297.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 293.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 291.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 285.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 278.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 276.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 276.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 263.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 259.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 259.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 251.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 248.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 246.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 245.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 241.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 238.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 238.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 236.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 234.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 232.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 228.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 227.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 226.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 218.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 207.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 204.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 204.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 204.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 200.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 198.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 193.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 192.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 184.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 166.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 163.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 158.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 151.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 150.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 147.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 133.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 131.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 131.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 129.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 126.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 102.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 99.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 82.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 128.1
FF:10181-103D1 60 years, female 151.0
FF:10159-103A6 76 years, female 105.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 12.8
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.8
Sample A Female 13.1
Sample B Female 11.8
Sample C Male 12.8
Sample D Male 13.5
Ventral spinal cord
nTPM: 12.3
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.2
Sample A Female 11.7
Sample B Female 11.6
Sample C Male 11.2
Sample D Male 14.5

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