A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.5
nTPM
Monaco:
25.1
nTPM
Schmiedel:
24.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
HPA sample
nTPM
Classical monocyte nTPM: 2.5
Samples: 6
Max nTPM: 3.2
Min nTPM: 1.8
P10809_1003
2.9
P10809_1020
2.4
P10809_1039
2.0
P10809_1058
1.8
P10809_1080
2.8
P10809_1107
3.2
Intermediate monocyte nTPM: 2.5
Samples: 6
Max nTPM: 4.6
Min nTPM: 0.5
P10809_1004
2.4
P10809_1023
4.6
P10809_1042
2.4
P10809_1061
0.5
P10809_1081
2.2
P10809_1108
2.7
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 4.3
Min nTPM: 0.0
P10809_1005
3.5
P10809_1053
4.3
P10809_1072
0.0
P10809_1082
2.3
P10809_1109
2.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.1
Monaco sample
nTPM
Classical monocyte nTPM: 16.0
Samples: 4
Max nTPM: 23.3
Min nTPM: 9.3
RHH5313_R3680
15.2
RHH5221_R3593
9.3
RHH5250_R3622
23.3
RHH5279_R3651
16.2
Intermediate monocyte nTPM: 17.7
Samples: 4
Max nTPM: 19.2
Min nTPM: 14.2
RHH5314_R3681
19.2
RHH5222_R3594
19.0
RHH5251_R3623
18.4
RHH5280_R3652
14.2
Non-classical monocyte nTPM: 25.1
Samples: 4
Max nTPM: 29.3
Min nTPM: 22.7
RHH5315_R3682
23.8
RHH5223_R3595
24.4
RHH5252_R3624
29.3
RHH5281_R3653
22.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.6
Schmiedel sample id
TPM
Classical monocyte TPM: 16.2
Samples: 91
Max TPM: 21.9
Min TPM: 11.6
MONOCYTES_1
21.9
MONOCYTES_2
19.6
MONOCYTES_3
19.4
MONOCYTES_4
19.2
MONOCYTES_5
18.9
MONOCYTES_6
18.8
MONOCYTES_7
18.5
MONOCYTES_8
18.5
MONOCYTES_9
18.4
MONOCYTES_10
18.3
MONOCYTES_11
18.1
MONOCYTES_12
18.1
MONOCYTES_13
18.0
MONOCYTES_14
18.0
MONOCYTES_15
17.9
MONOCYTES_16
17.9
MONOCYTES_17
17.8
MONOCYTES_18
17.8
MONOCYTES_19
17.7
MONOCYTES_20
17.6
MONOCYTES_21
17.6
MONOCYTES_22
17.5
MONOCYTES_23
17.5
MONOCYTES_24
17.4
MONOCYTES_25
17.4
MONOCYTES_26
17.3
MONOCYTES_27
17.3
MONOCYTES_28
17.2
MONOCYTES_29
17.2
MONOCYTES_30
17.1
MONOCYTES_31
17.0
MONOCYTES_32
17.0
MONOCYTES_33
17.0
MONOCYTES_34
16.9
MONOCYTES_35
16.9
MONOCYTES_36
16.9
MONOCYTES_37
16.9
MONOCYTES_38
16.8
MONOCYTES_39
16.8
MONOCYTES_40
16.8
MONOCYTES_41
16.8
MONOCYTES_42
16.7
MONOCYTES_43
16.6
MONOCYTES_44
16.5
MONOCYTES_45
16.4
MONOCYTES_46
16.4
MONOCYTES_47
16.3
MONOCYTES_48
16.2
MONOCYTES_49
16.0
MONOCYTES_50
16.0
MONOCYTES_51
16.0
MONOCYTES_52
15.9
MONOCYTES_53
15.9
MONOCYTES_54
15.9
MONOCYTES_55
15.8
MONOCYTES_56
15.8
MONOCYTES_57
15.5
MONOCYTES_58
15.4
MONOCYTES_59
15.3
MONOCYTES_60
15.2
MONOCYTES_61
15.1
MONOCYTES_62
15.1
MONOCYTES_63
15.0
MONOCYTES_64
14.9
MONOCYTES_65
14.8
MONOCYTES_66
14.8
MONOCYTES_67
14.8
MONOCYTES_68
14.8
MONOCYTES_69
14.8
MONOCYTES_70
14.7
MONOCYTES_71
14.7
MONOCYTES_72
14.6
MONOCYTES_73
14.6
MONOCYTES_74
14.5
MONOCYTES_75
14.5
MONOCYTES_76
14.4
MONOCYTES_77
14.4
MONOCYTES_78
14.4
MONOCYTES_79
14.3
MONOCYTES_80
14.2
MONOCYTES_81
14.1
MONOCYTES_82
13.9
MONOCYTES_83
13.9
MONOCYTES_84
13.7
MONOCYTES_85
13.6
MONOCYTES_86
13.3
MONOCYTES_87
13.1
MONOCYTES_88
13.1
MONOCYTES_89
12.7
MONOCYTES_90
12.4
MONOCYTES_91
11.6
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Non-classical monocyte TPM: 24.6
Samples: 90
Max TPM: 30.5
Min TPM: 20.0
M2_1
30.5
M2_2
29.3
M2_3
28.5
M2_4
27.8
M2_5
27.6
M2_6
27.6
M2_7
27.6
M2_8
27.5
M2_9
27.4
M2_10
27.4
M2_11
27.4
M2_12
27.1
M2_13
27.0
M2_14
26.7
M2_15
26.4
M2_16
26.3
M2_17
26.3
M2_18
26.3
M2_19
26.2
M2_20
26.2
M2_21
26.2
M2_22
26.1
M2_23
26.1
M2_24
26.0
M2_25
26.0
M2_26
25.9
M2_27
25.9
M2_28
25.8
M2_29
25.6
M2_30
25.6
M2_31
25.5
M2_32
25.5
M2_33
25.4
M2_34
25.3
M2_35
25.3
M2_36
25.2
M2_37
25.2
M2_38
25.2
M2_39
25.0
M2_40
24.9
M2_41
24.9
M2_42
24.8
M2_43
24.8
M2_44
24.5
M2_45
24.5
M2_46
24.5
M2_47
24.4
M2_48
24.4
M2_49
24.4
M2_50
24.4
M2_51
24.3
M2_52
24.3
M2_53
24.3
M2_54
24.2
M2_55
24.2
M2_56
24.1
M2_57
24.1
M2_58
24.1
M2_59
24.1
M2_60
24.0
M2_61
23.9
M2_62
23.6
M2_63
23.5
M2_64
23.5
M2_65
23.3
M2_66
23.2
M2_67
23.2
M2_68
23.1
M2_69
23.1
M2_70
23.1
M2_71
22.8
M2_72
22.7
M2_73
22.5
M2_74
22.5
M2_75
22.4
M2_76
22.2
M2_77
21.8
M2_78
21.8
M2_79
21.6
M2_80
21.5
M2_81
21.5
M2_82
21.4
M2_83
21.3
M2_84
21.2
M2_85
21.1
M2_86
21.1
M2_87
20.9
M2_88
20.8
M2_89
20.2
M2_90
20.0
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