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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.4
Sample id
Sample description
nTPM
Amygdala nTPM: 44.9
2517
Female, age 94, left hemisphere
87.0
1987
Female, age 91, left hemisphere
57.3
2514
Male, age 75, right hemisphere
32.1
2814
Male, age 76, right hemisphere
24.8
2695
Female, age 67, right hemisphere
23.5
Basal amygdala nTPM: 137.9
2827
Female, age 67, right hemisphere
210.4
2685
Female, age 94, left hemisphere
202.0
2243
Female, age 91, right hemisphere
125.8
2110
Male, age 80, left hemisphere
125.2
2609
Male, age 75, right hemisphere
94.5
1955
Male, age 76, both hemispheres
69.5
Central amygdala nTPM: 101.5
2826
Female, age 94, left hemisphere
169.5
2239
Male, age 80, left hemisphere
135.5
2701
Female, age 91, right hemisphere
112.0
2515
Male, age 75, right hemisphere
66.9
1905
Male, age 76, both hemispheres
23.5
Corticomedial amygdala nTPM: 138.4
2535
Female, age 67, right hemisphere
242.6
2829
Male, age 80, left hemisphere
147.6
2429
Female, age 94, left hemisphere
142.3
2242
Female, age 91, right hemisphere
130.7
2428
Male, age 75, right hemisphere
88.2
2240
Male, age 76, both hemispheres
78.8
Lateral amygdala nTPM: 116.7
2256
Male, age 80, left hemisphere
215.2
2534
Female, age 94, left hemisphere
198.6
2255
Female, age 91, right hemisphere
116.0
2830
Female, age 67, right hemisphere
80.1
2516
Male, age 75, right hemisphere
46.7
1883
Male, age 76, both hemispheres
43.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 49.8
Samples: 181
Max nTPM: 160.9
Min nTPM: 5.7
Std nTPM: 28.5
Median nTPM: 45.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
160.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
149.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
145.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
140.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
117.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
115.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
113.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
110.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
107.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
100.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
99.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
95.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
95.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
93.6
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
93.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
90.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
89.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
88.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
87.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
86.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
81.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
81.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
80.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
79.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
78.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
77.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
77.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
77.3
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
76.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
76.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
74.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
73.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
73.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
72.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
72.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
70.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
70.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
69.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
68.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
68.6
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
68.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
68.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
67.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
67.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
66.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
66.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
65.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
63.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
62.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
62.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
62.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
61.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
61.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
60.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
59.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
59.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
58.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
58.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
57.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
56.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
56.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
55.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
54.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
54.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
52.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
52.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
52.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
52.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
52.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
51.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
51.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
51.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
51.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
51.4
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
51.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
50.6
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
50.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
49.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
49.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
49.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
48.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
47.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
47.1
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
47.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
46.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
46.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
46.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
45.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
45.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
45.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
45.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
44.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
43.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
42.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
42.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
42.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
40.8
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
40.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
39.7
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
39.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
39.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
39.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
38.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
38.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
38.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
37.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
37.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
36.6
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
36.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
35.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
35.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
35.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
35.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
35.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
34.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
34.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
34.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
34.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
34.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
34.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
33.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
33.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
33.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
32.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
32.9
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
32.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
32.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
31.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
31.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
30.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
30.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
30.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
30.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
30.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
30.2
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
29.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
29.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
29.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
28.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
28.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
27.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
27.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
26.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
25.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
25.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
25.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
25.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
24.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
24.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
24.7
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
24.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
23.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
23.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
23.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
23.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
22.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
22.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
21.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
21.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
21.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
19.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
19.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
19.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
19.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
19.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
18.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
18.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
18.2
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
17.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
16.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
15.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
14.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
14.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
13.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
13.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
11.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
8.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
8.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
8.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
5.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 46.7
Samples: 4
Max nTPM: 66.9
Min nTPM: 31.7
Sample A
Female
66.9
Sample B
Female
31.7
Sample C
Male
41.7
Sample D
Male
46.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
