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  • TRAPPC2L
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:73.7 nTPM
HPA Brain:36.1 nTPM
GTEx:73.7 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:65.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 30.1
1981 Female, age 72, midline 37.9
2194 Female, age 79, both hemispheres 37.9
2565 Male, age 75, midline 27.9
2816 Male, age 47, midline 25.3
2048 Male, age 55, midline 21.4
Cervical spinal cord, dorsal horn
nTPM: 36.1
2069 Male, age 47, both hemispheres 45.0
2296 Male, age 66, both hemispheres 43.4
2173 Female, age 72, unknown 43.1
1877 Male, age 55, unknown 32.1
2297 Male, age 75, both hemispheres 26.7
2721 Male, age 90, both hemispheres 26.2
Cervical spinal cord, ventral horn
nTPM: 30.1
2480 Male, age 75, both hemispheres 36.0
2098 Female, age 72, unknown 35.6
2068 Male, age 55, unknown 30.2
2295 Male, age 66, both hemispheres 30.2
2809 Male, age 90, both hemispheres 28.7
2820 Female, age 79, both hemispheres 20.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 73.7
Samples: 204

Max nTPM: 149.2
Min nTPM: 16.3
Std nTPM: 24.7
Median nTPM: 71.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 149.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 136.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 135.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 134.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 128.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 124.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 122.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 121.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 120.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 117.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 116.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 114.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 114.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 113.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 113.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 111.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 108.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 108.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 107.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 106.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 106.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 105.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 105.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 105.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 101.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 101.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 98.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 98.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 98.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 97.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 96.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 96.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 96.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 95.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 95.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 94.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 94.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 93.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 93.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 92.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 92.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 92.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 91.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 89.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 89.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 88.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 87.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 87.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 86.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 86.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 86.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 86.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 85.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 84.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 83.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 83.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 82.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 81.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 81.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 81.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 80.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 80.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 80.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 80.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 79.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 78.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 77.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 77.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 77.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 77.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 77.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 77.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 77.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 76.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 76.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 76.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 75.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 75.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 74.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 74.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 74.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 73.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 72.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 72.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 72.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 71.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 71.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 70.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 70.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 69.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 69.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 69.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 69.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 68.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 68.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 68.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 68.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 68.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 67.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 67.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 67.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 67.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 66.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 66.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 66.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 66.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 65.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 65.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 65.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 65.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 65.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 64.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 62.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 62.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 62.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 60.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 60.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 60.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 60.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 59.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 59.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 59.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 58.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 58.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 58.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 57.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 57.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 57.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 57.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 56.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 56.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 55.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 55.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 55.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 54.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 54.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 54.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 54.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 54.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 54.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 52.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 52.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 52.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 52.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 51.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 50.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 49.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 49.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 49.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 48.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 45.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 44.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 42.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 42.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 40.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 39.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 39.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 39.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 38.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 38.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 38.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 37.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 37.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 35.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 35.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 35.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 34.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 34.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 28.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 27.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 27.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 25.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 18.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 16.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 35.6
FF:10181-103D1 60 years, female 45.1
FF:10159-103A6 76 years, female 26.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 61.9
Samples: 4

Max nTPM: 69.3
Min nTPM: 56.1
Sample A Female 69.3
Sample B Female 56.1
Sample C Male 59.5
Sample D Male 62.8
Ventral spinal cord
nTPM: 65.4
Samples: 4

Max nTPM: 79.0
Min nTPM: 54.5
Sample A Female 64.5
Sample B Female 79.0
Sample C Male 63.6
Sample D Male 54.5

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