BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:571.6 nTPM
HPA Brain:728.5 nTPM
GTEx:571.6 nTPM
FANTOM5:647.6 Scaled Tags Per Million
Macaque:327.9 nTPM
Mouse:873.6 nTPM
Rat:494.5 nTPM
Pig:632.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 728.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 658.6
2586 Male, age 75, left hemisphere 852.7
2828 Female, age 72, unknown 706.4
2666 Male, age 74, left hemisphere 706.2
1827 Male, age 72, unknown 644.6
2219 Male, age 76, both hemispheres 632.6
2411 Female, age 72, unknown 625.4
2019 Male, age 18, unknown 616.2
1870 Female, age 42, unknown 614.2
1833 Male, age 53, unknown 604.6
1830 Male, age 51, unknown 582.8
Dorsal raphe nucleus
nTPM: 610.6
2016 Female, age 72, unknown 622.6
2750 Male, age 76, both hemispheres 617.6
2298 Female, age 72, unknown 608.4
1828 Male, age 53, unknown 604.2
2047 Male, age 72, unknown 599.9
Inferior colliculus
nTPM: 617.8
1848 Female, age 42, unknown 667.3
2849 Male, age 72, unknown 611.0
1890 Male, age 53, unknown 607.9
2097 Female, age 72, unknown 585.1
Median raphe nucleus
nTPM: 566.9
2220 Male, age 76, midline 566.9
Periaquaductal grey, anterior
nTPM: 728.5
2502 Female, age 75, unknown 812.3
1947 Male, age 18, unknown 694.5
1795 Male, age 51, unknown 678.7
Periaquaductal grey, dorsal
nTPM: 544.6
1840 Male, age 53, unknown 617.5
2464 Female, age 72, unknown 574.4
1831 Male, age 72, unknown 535.1
2850 Male, age 76, both hemispheres 451.2
Periaquaductal grey, lateral
nTPM: 543.5
2272 Male, age 74, both hemispheres 588.8
2053 Male, age 18, unknown 586.4
2140 Male, age 76, both hemispheres 455.3
Pretectal area
nTPM: 602.6
1816 Male, age 51, unknown 683.2
2007 Male, age 72, unknown 669.6
1817 Female, age 42, unknown 667.3
1944 Female, age 72, unknown 623.8
1815 Male, age 53, unknown 608.7
2407 Male, age 75, both hemispheres 594.6
2825 Male, age 18, unknown 594.5
2667 Female, age 75, unknown 589.8
2224 Female, age 72, unknown 545.6
2273 Male, age 74, both hemispheres 536.7
2316 Male, age 76, right hemisphere 514.7
Red nucleus
nTPM: 647.7
2584 Male, age 75, left hemisphere 753.6
2503 Female, age 72, unknown 719.0
2588 Male, age 74, left hemisphere 665.6
2769 Male, age 72, unknown 664.7
2227 Male, age 72, unknown 661.3
1821 Female, age 72, unknown 655.7
1865 Male, age 51, unknown 653.5
2785 Male, age 18, unknown 638.0
1904 Male, age 53, unknown 637.0
1954 Female, age 42, unknown 608.7
2725 Female, age 75, unknown 567.4
2823 Male, age 76, right hemisphere 548.1
Substantia nigra
nTPM: 703.9
1916 Female, age 42, unknown 878.6
2665 Male, age 74, both hemispheres 785.4
1851 Male, age 51, unknown 773.7
2590 Female, age 75, unknown 696.6
2241 Male, age 72, unknown 691.7
1941 Male, age 53, unknown 685.3
2583 Male, age 75, right hemisphere 678.3
2699 Male, age 18, unknown 672.5
1889 Female, age 72, unknown 629.7
2409 Female, age 72, unknown 547.5
Superior colliculus
nTPM: 649.5
2664 Male, age 75, both hemispheres 770.5
1796 Male, age 53, unknown 702.3
2261 Male, age 18, unknown 701.6
2668 Female, age 75, unknown 671.1
2087 Female, age 72, unknown 649.4
2587 Male, age 74, left hemisphere 645.4
1839 Male, age 51, unknown 619.0
1913 Female, age 42, unknown 601.2
1995 Male, age 72, unknown 585.7
1895 Male, age 76, right hemisphere 548.9
Ventral tegmental area
nTPM: 663.0
2410 Female, age 72, unknown 713.3
1915 Female, age 42, unknown 689.4
2223 Female, age 72, unknown 662.8
2218 Male, age 76, both hemispheres 657.0
1942 Male, age 51, unknown 651.4
2021 Male, age 53, unknown 604.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 571.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 571.6
Samples: 183

Max nTPM: 1101.1
Min nTPM: 267.7
Std nTPM: 128.7
Median nTPM: 561.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1101.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1014.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 945.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 920.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 879.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 868.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 833.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 828.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 819.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 804.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 796.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 647.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 647.6
FF:10158-103A5 76 years, female 647.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 327.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 294.1
Samples: 1

Max nTPM: 294.1
Min nTPM: 294.1
Sample A 294.1
Midbrain
nTPM: 232.3
Samples: 1

Max nTPM: 232.3
Min nTPM: 232.3
Sample A 232.3
Superior colliculi
nTPM: 327.9
Samples: 1

Max nTPM: 327.9
Min nTPM: 327.9
Sample A 327.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 632.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 543.9
Samples: 3

Max nTPM: 606.8
Min nTPM: 490.7
Sample A Female 606.8
Sample B Female 490.7
Sample C Male 534.3
Midbrain
nTPM: 546.8
Samples: 3

Max nTPM: 625.5
Min nTPM: 493.2
Sample B Female 493.2
Sample C Male 625.5
Sample D Male 521.7
Periaqueductal gray
nTPM: 414.3
Samples: 3

Max nTPM: 447.2
Min nTPM: 348.9
Sample B Female 446.9
Sample C Male 447.2
Sample D Male 348.9
Superior colliculi
nTPM: 632.9
Samples: 4

Max nTPM: 665.7
Min nTPM: 590.6
Sample A Female 665.7
Sample B Female 662.3
Sample C Male 613.0
Sample D Male 590.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 873.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 873.6
Samples: 4

Max nTPM: 930.0
Min nTPM: 825.9
Sample A 883.5
Sample B 930.0
Sample C 854.9
Sample D 825.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 494.5
Rat sample Sample description nTPM
Midbrain
nTPM: 494.5
Samples: 4

Max nTPM: 518.0
Min nTPM: 466.6
Sample A 518.0
Sample A 493.7
Sample A 499.6
Sample A 466.6

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