A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
2.5
nTPM
Schmiedel:
21.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
Classical monocyte nTPM: 3.6
Samples: 6
Max nTPM: 8.2
Min nTPM: 1.4
P10809_1003
2.1
P10809_1020
2.3
P10809_1039
8.2
P10809_1058
1.4
P10809_1080
2.3
P10809_1107
5.0
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.5
P10809_1004
1.6
P10809_1023
2.0
P10809_1042
0.5
P10809_1061
0.5
P10809_1081
0.8
P10809_1108
2.0
Non-classical monocyte nTPM: 0.2
Samples: 5
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1005
0.1
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
Monaco sample
nTPM
Classical monocyte nTPM: 2.1
Samples: 4
Max nTPM: 2.8
Min nTPM: 1.4
RHH5313_R3680
2.3
RHH5221_R3593
1.7
RHH5250_R3622
1.4
RHH5279_R3651
2.8
Intermediate monocyte nTPM: 2.5
Samples: 4
Max nTPM: 3.9
Min nTPM: 1.1
RHH5314_R3681
3.9
RHH5222_R3594
1.1
RHH5251_R3623
1.6
RHH5280_R3652
3.4
Non-classical monocyte nTPM: 1.1
Samples: 4
Max nTPM: 2.4
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
1.6
RHH5252_R3624
0.3
RHH5281_R3653
2.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
Schmiedel sample id
TPM
Classical monocyte TPM: 21.0
Samples: 91
Max TPM: 30.7
Min TPM: 9.4
MONOCYTES_1
30.7
MONOCYTES_2
30.7
MONOCYTES_3
29.9
MONOCYTES_4
29.5
MONOCYTES_5
29.5
MONOCYTES_6
28.1
MONOCYTES_7
28.0
MONOCYTES_8
27.6
MONOCYTES_9
27.2
MONOCYTES_10
27.2
MONOCYTES_11
27.1
MONOCYTES_12
27.0
MONOCYTES_13
26.3
MONOCYTES_14
26.3
MONOCYTES_15
26.2
MONOCYTES_16
26.2
MONOCYTES_17
26.1
MONOCYTES_18
26.0
MONOCYTES_19
25.9
MONOCYTES_20
25.1
MONOCYTES_21
25.0
MONOCYTES_22
24.9
MONOCYTES_23
24.9
MONOCYTES_24
24.4
MONOCYTES_25
24.0
MONOCYTES_26
23.8
MONOCYTES_27
23.8
MONOCYTES_28
23.3
MONOCYTES_29
23.2
MONOCYTES_30
23.1
MONOCYTES_31
23.1
MONOCYTES_32
23.1
MONOCYTES_33
22.8
MONOCYTES_34
22.8
MONOCYTES_35
22.7
MONOCYTES_36
22.7
MONOCYTES_37
22.5
MONOCYTES_38
22.2
MONOCYTES_39
22.0
MONOCYTES_40
21.5
MONOCYTES_41
21.5
MONOCYTES_42
21.2
MONOCYTES_43
21.2
MONOCYTES_44
21.1
MONOCYTES_45
21.0
MONOCYTES_46
20.9
MONOCYTES_47
20.8
MONOCYTES_48
20.5
MONOCYTES_49
20.5
MONOCYTES_50
20.5
MONOCYTES_51
20.4
MONOCYTES_52
20.3
MONOCYTES_53
20.2
MONOCYTES_54
20.0
MONOCYTES_55
19.9
MONOCYTES_56
19.7
MONOCYTES_57
19.6
MONOCYTES_58
19.5
MONOCYTES_59
19.4
MONOCYTES_60
19.1
MONOCYTES_61
18.9
MONOCYTES_62
18.8
MONOCYTES_63
18.7
MONOCYTES_64
18.4
MONOCYTES_65
18.4
MONOCYTES_66
18.4
MONOCYTES_67
18.3
MONOCYTES_68
18.1
MONOCYTES_69
18.0
MONOCYTES_70
18.0
MONOCYTES_71
17.7
MONOCYTES_72
17.5
MONOCYTES_73
17.2
MONOCYTES_74
17.1
MONOCYTES_75
16.8
MONOCYTES_76
16.7
MONOCYTES_77
15.9
MONOCYTES_78
15.8
MONOCYTES_79
15.7
MONOCYTES_80
15.5
MONOCYTES_81
15.0
MONOCYTES_82
14.8
MONOCYTES_83
14.7
MONOCYTES_84
14.2
MONOCYTES_85
13.7
MONOCYTES_86
12.6
MONOCYTES_87
12.5
MONOCYTES_88
12.2
MONOCYTES_89
11.2
MONOCYTES_90
10.2
MONOCYTES_91
9.4
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Non-classical monocyte TPM: 7.8
Samples: 90
Max TPM: 13.2
Min TPM: 1.6
M2_1
13.2
M2_2
12.9
M2_3
12.5
M2_4
12.3
M2_5
12.3
M2_6
12.3
M2_7
12.2
M2_8
12.2
M2_9
12.1
M2_10
12.1
M2_11
12.0
M2_12
11.4
M2_13
11.3
M2_14
11.3
M2_15
10.7
M2_16
10.6
M2_17
10.5
M2_18
10.5
M2_19
10.5
M2_20
10.4
M2_21
10.1
M2_22
9.9
M2_23
9.9
M2_24
9.8
M2_25
9.7
M2_26
9.5
M2_27
9.4
M2_28
9.3
M2_29
9.3
M2_30
9.3
M2_31
9.2
M2_32
9.2
M2_33
9.1
M2_34
9.1
M2_35
9.1
M2_36
9.0
M2_37
9.0
M2_38
8.9
M2_39
8.9
M2_40
8.9
M2_41
8.7
M2_42
8.4
M2_43
8.3
M2_44
8.2
M2_45
8.1
M2_46
8.1
M2_47
7.8
M2_48
7.8
M2_49
7.6
M2_50
7.5
M2_51
7.5
M2_52
7.3
M2_53
7.3
M2_54
7.2
M2_55
6.9
M2_56
6.9
M2_57
6.9
M2_58
6.7
M2_59
6.7
M2_60
6.4
M2_61
6.4
M2_62
6.3
M2_63
6.2
M2_64
6.0
M2_65
5.8
M2_66
5.8
M2_67
5.6
M2_68
5.6
M2_69
5.6
M2_70
5.6
M2_71
5.5
M2_72
5.4
M2_73
5.3
M2_74
5.2
M2_75
5.2
M2_76
4.9
M2_77
4.9
M2_78
4.6
M2_79
4.4
M2_80
3.7
M2_81
3.7
M2_82
3.6
M2_83
3.4
M2_84
3.1
M2_85
2.8
M2_86
2.4
M2_87
2.2
M2_88
2.1
M2_89
1.9
M2_90
1.6
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