MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.7 nTPM
HPA Brain:58.8 nTPM
GTEx:67.7 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:9.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
2828 Female, age 72, unknown 58.5
1870 Female, age 42, unknown 53.3
1830 Male, age 51, unknown 51.7
2019 Male, age 18, unknown 51.1
2666 Male, age 74, left hemisphere 49.6
2219 Male, age 76, both hemispheres 46.6
1833 Male, age 53, unknown 46.1
2586 Male, age 75, left hemisphere 45.8
1827 Male, age 72, unknown 45.6
2411 Female, age 72, unknown 42.3
Dorsal raphe nucleus
nTPM: 47.3
1828 Male, age 53, unknown 51.1
2750 Male, age 76, both hemispheres 47.9
2016 Female, age 72, unknown 47.6
2047 Male, age 72, unknown 46.9
2298 Female, age 72, unknown 42.8
Inferior colliculus
nTPM: 40.4
2849 Male, age 72, unknown 44.1
1848 Female, age 42, unknown 39.5
2097 Female, age 72, unknown 39.4
1890 Male, age 53, unknown 38.6
Median raphe nucleus
nTPM: 58.8
2220 Male, age 76, midline 58.8
Periaquaductal grey, anterior
nTPM: 44.1
2502 Female, age 75, unknown 51.7
1795 Male, age 51, unknown 43.4
1947 Male, age 18, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 48.4
2850 Male, age 76, both hemispheres 71.8
1831 Male, age 72, unknown 44.1
2464 Female, age 72, unknown 40.5
1840 Male, age 53, unknown 37.0
Periaquaductal grey, lateral
nTPM: 47.5
2140 Male, age 76, both hemispheres 56.0
2272 Male, age 74, both hemispheres 44.3
2053 Male, age 18, unknown 42.2
Pretectal area
nTPM: 47.2
2667 Female, age 75, unknown 57.4
1817 Female, age 42, unknown 53.3
1815 Male, age 53, unknown 52.6
2007 Male, age 72, unknown 49.4
2273 Male, age 74, both hemispheres 47.6
2224 Female, age 72, unknown 46.4
2825 Male, age 18, unknown 44.8
1944 Female, age 72, unknown 44.6
1816 Male, age 51, unknown 42.8
2407 Male, age 75, both hemispheres 42.4
2316 Male, age 76, right hemisphere 38.6
Red nucleus
nTPM: 51.9
2785 Male, age 18, unknown 60.7
1904 Male, age 53, unknown 58.7
1865 Male, age 51, unknown 56.8
2769 Male, age 72, unknown 55.4
2503 Female, age 72, unknown 53.0
2588 Male, age 74, left hemisphere 52.7
1954 Female, age 42, unknown 52.1
2584 Male, age 75, left hemisphere 51.9
2227 Male, age 72, unknown 51.1
1821 Female, age 72, unknown 46.9
2725 Female, age 75, unknown 43.8
2823 Male, age 76, right hemisphere 39.7
Substantia nigra
nTPM: 47.4
1916 Female, age 42, unknown 56.8
1941 Male, age 53, unknown 52.9
2699 Male, age 18, unknown 52.8
2665 Male, age 74, both hemispheres 52.0
2583 Male, age 75, right hemisphere 49.5
1851 Male, age 51, unknown 48.0
1889 Female, age 72, unknown 46.2
2409 Female, age 72, unknown 43.9
2590 Female, age 75, unknown 38.1
2241 Male, age 72, unknown 33.4
Superior colliculus
nTPM: 44.8
1995 Male, age 72, unknown 57.8
1913 Female, age 42, unknown 55.2
2587 Male, age 74, left hemisphere 45.0
2668 Female, age 75, unknown 44.4
1796 Male, age 53, unknown 44.0
2087 Female, age 72, unknown 43.8
2261 Male, age 18, unknown 43.8
1839 Male, age 51, unknown 42.6
2664 Male, age 75, both hemispheres 37.2
1895 Male, age 76, right hemisphere 34.2
Ventral tegmental area
nTPM: 47.6
2223 Female, age 72, unknown 54.3
2218 Male, age 76, both hemispheres 48.1
2410 Female, age 72, unknown 47.9
1915 Female, age 42, unknown 46.8
1942 Male, age 51, unknown 45.8
2021 Male, age 53, unknown 42.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.7
Samples: 183

Max nTPM: 212.8
Min nTPM: 19.0
Std nTPM: 32.4
Median nTPM: 61.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 212.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 188.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 176.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 174.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 174.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 165.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 153.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 149.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 149.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 142.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 138.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 30.2
Sample A Female 36.7
Sample B Female 30.9
Sample C Male 30.2
Sample D Male 30.4
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 55.6
Min nTPM: 23.6
Sample A Female 55.6
Sample B Female 28.3
Sample C Male 27.6
Sample D Male 23.6
Periaqueductal gray
nTPM: 30.0
Samples: 3

Max nTPM: 32.9
Min nTPM: 26.4
Sample B Female 26.4
Sample C Male 30.8
Sample D Male 32.9
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 38.0
Min nTPM: 30.2
Sample A Female 38.0
Sample B Female 36.3
Sample C Male 30.2
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.8
Sample A Male 10.6
Sample B Male 7.8
Sample C Female 8.0
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68498974 Antisense, RP_050113_02_G02, Mouse strain C57BL/6J (56 days, male) 0.1

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