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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • ATP5PD
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:294.8 nTPM
FANTOM5:172.5 Scaled Tags Per Million
Pig:7.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042777Antibody HPA048459
Glial cells MediumNot detected
Neuronal cells MediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 294.8
Samples: 300

Max nTPM: 717.4
Min nTPM: 163.9
Std nTPM: 84.4
Median nTPM: 282.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 717.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 633.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 633.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 615.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 570.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 560.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 554.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 540.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 483.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 471.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 465.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 462.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 451.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 444.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 443.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 442.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 440.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 438.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 436.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 429.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 424.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 419.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 415.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 414.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 413.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 412.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 409.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 403.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 403.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 403.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 400.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 396.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 392.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 392.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 387.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 386.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 385.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 383.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 377.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 373.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 370.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 370.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 369.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 368.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 368.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 364.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 363.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 363.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 362.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 361.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 361.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 361.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 359.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 357.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 352.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 352.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 352.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 350.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 350.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 347.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 346.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 346.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 344.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 343.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 343.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 340.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 340.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 338.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 338.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 335.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 333.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 332.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 331.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 331.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 330.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 329.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 329.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 329.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 328.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 327.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 327.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 326.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 325.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 325.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 325.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 324.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 324.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 323.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 321.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 320.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 320.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 319.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 317.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 317.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 316.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 316.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 315.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 315.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 314.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 312.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 311.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 311.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 310.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 310.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 309.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 308.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 307.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 306.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 306.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 306.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 306.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 306.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 305.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 305.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 305.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 304.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 302.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 301.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 301.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 301.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 300.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 299.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 299.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 299.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 298.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 297.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 296.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 294.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 294.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 294.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 292.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 292.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 292.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 291.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 291.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 290.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 290.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 290.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 290.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 290.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 289.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 287.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 285.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 285.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 284.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 284.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 284.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 283.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 283.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 282.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 281.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 281.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 280.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 279.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 278.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 277.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 277.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 276.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 276.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 274.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 274.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 274.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 272.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 272.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 270.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 270.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 268.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 268.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 268.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 267.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 266.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 265.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 265.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 265.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 264.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 263.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 263.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 262.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 262.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 262.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 261.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 261.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 260.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 260.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 260.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 260.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 259.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 258.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 258.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 258.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 257.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 257.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 256.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 256.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 256.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 255.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 253.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 252.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 252.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 251.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 250.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 250.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 250.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 250.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 249.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 249.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 246.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 245.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 243.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 243.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 243.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 243.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 242.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 241.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 241.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 241.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 239.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 239.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 238.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 237.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 237.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 236.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 236.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 235.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 235.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 235.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 234.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 234.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 234.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 234.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 233.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 232.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 232.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 231.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 230.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 230.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 229.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 227.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 227.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 225.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 225.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 225.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 225.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 223.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 222.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 222.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 221.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 220.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 220.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 219.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 219.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 217.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 217.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 216.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 216.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 215.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 214.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 214.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 214.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 213.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 211.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 211.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 210.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 210.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 209.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 209.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 208.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 208.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 207.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 205.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 205.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 204.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 204.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 204.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 203.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 202.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 202.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 202.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 200.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 200.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 199.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 199.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 198.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 196.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 191.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 190.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 189.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 187.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 186.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 185.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 185.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 184.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 181.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 179.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 178.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 176.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 171.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 165.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 165.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 163.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 172.5
FF:10164-103B2 76 years, female 172.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.4
Pig sample Sample description nTPM
Caudate
nTPM: 7.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.7
Sample A Female 7.9
Sample B Female 8.1
Sample C Male 6.7
Sample D Male 6.7

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