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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:237.2 nTPM
GTEx:237.2 nTPM
FANTOM5:196.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 237.2
Samples: 105

Max nTPM: 323.3
Min nTPM: 158.5
Std nTPM: 32.5
Median nTPM:
375_1 74 years, female 323.3
246_1 77 years, male 321.6
162_1 79 years, female 300.7
414_1 84 years, female 297.2
142_1 61 years, female 289.4
413_1 59 years, female 288.4
396_1 62 years, male 288.2
229_1 69 years, female 287.1
466_1 57 years, female 283.3
379_1 60 years, male 283.0
126_1 63 years, male 276.8
35_1 74 years, female 276.2
237_1 82 years, male 276.1
377_1 82 years, female 275.7
313_1 79 years, female 274.8
490_1 67 years, female 274.3
2_1 77 years, female 271.2
384_1 83 years, male 270.7
386_1 76 years, male 270.7
265_1 87 years, male 270.3
315_1 62 years, female 264.2
43_1 64 years, female 264.1
153_1 70 years, female 262.9
6_1 73 years, female 261.4
177_1 74 years, male 260.2
120_1 70 years, female 260.0
501_1 88 years, male 258.0
17_1 71 years, male 257.6
189_1 76 years, male 256.0
4_1 88 years, female 255.2
115_1 83 years, male 255.2
415_1 77 years, female 253.7
319_1 81 years, male 253.3
468_1 89 years, male 253.1
9_1 66 years, female 252.1
117_1 61 years, male 249.2
324_1 76 years, male 248.5
491_1 89 years, female 248.5
389_1 86 years, female 248.2
347_1 72 years, male 248.0
254_1 77 years, female 247.9
394_1 75 years, female 247.7
307_1 66 years, female 247.5
42_1 85 years, male 246.9
145_1 84 years, male 246.7
499_1 55 years, female 245.8
18_1 88 years, male 245.5
321_1 62 years, female 244.6
109_1 81 years, female 242.8
243_1 75 years, male 242.1
447_1 81 years, male 241.0
376_1 75 years, female 240.9
217_1 76 years, male 240.6
526_1 61 years, male 236.0
452_1 88 years, female 233.2
404_1 82 years, female 232.7
172_1 72 years, female 230.7
518_1 75 years, female 229.8
266_1 85 years, male 229.0
139_1 64 years, female 226.9
163_1 78 years, male 226.8
335_1 73 years, female 225.7
32_1 67 years, male 224.8
264_1 73 years, female 224.1
355_1 70 years, female 224.0
119_1 70 years, female 223.0
218_1 71 years, female 223.0
149_1 88 years, male 221.4
425_1 59 years, female 221.3
506_1 65 years, male 221.2
311_1 78 years, male 220.2
137_1 83 years, male 219.0
288_1 66 years, female 218.8
350_1 84 years, female 217.7
322_1 76 years, male 217.4
89_1 63 years, male 216.7
316_1 62 years, male 215.8
173_1 67 years, male 214.6
81_1 67 years, male 214.4
480_1 63 years, male 214.3
286_1 68 years, female 212.6
354_1 81 years, female 210.8
503_1 68 years, male 207.4
352_1 62 years, male 206.3
517_1 88 years, male 206.3
405_1 91 years, male 206.1
251_1 78 years, male 204.3
353_1 82 years, female 202.7
348_1 84 years, male 202.1
406_1 79 years, male 202.0
495_1 57 years, female 201.2
291_1 76 years, male 201.1
308_1 70 years, female 198.8
349_1 83 years, male 198.3
99_1 64 years, male 194.9
293_1 68 years, female 194.7
295_1 61 years, female 193.3
318_1 68 years, male 192.9
356_1 87 years, female 189.4
351_1 91 years, male 189.1
314_1 67 years, male 187.9
317_1 60 years, male 184.1
320_1 89 years, female 178.7
292_1 71 years, male 169.8
41_1 94 years, female 158.5
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 196.8
FF:10030-101E3 24-65 years, mixed 196.8

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