MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:300.4 nTPM
HPA Brain:122.6 nTPM
GTEx:300.4 nTPM
FANTOM5:132.7 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:981.2 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 122.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.4
1827 Male, age 72, unknown 128.6
2019 Male, age 18, unknown 122.8
2411 Female, age 72, unknown 114.8
1870 Female, age 42, unknown 107.2
1833 Male, age 53, unknown 103.7
2666 Male, age 74, left hemisphere 102.7
2828 Female, age 72, unknown 99.2
2219 Male, age 76, both hemispheres 96.8
1830 Male, age 51, unknown 96.5
2586 Male, age 75, left hemisphere 71.3
Dorsal raphe nucleus
nTPM: 110.9
2298 Female, age 72, unknown 132.2
1828 Male, age 53, unknown 118.0
2750 Male, age 76, both hemispheres 105.2
2047 Male, age 72, unknown 100.1
2016 Female, age 72, unknown 99.2
Inferior colliculus
nTPM: 118.8
2097 Female, age 72, unknown 139.2
1890 Male, age 53, unknown 115.6
1848 Female, age 42, unknown 110.9
2849 Male, age 72, unknown 109.3
Median raphe nucleus
nTPM: 102.8
2220 Male, age 76, midline 102.8
Periaquaductal grey, anterior
nTPM: 110.7
1947 Male, age 18, unknown 119.3
1795 Male, age 51, unknown 112.7
2502 Female, age 75, unknown 100.1
Periaquaductal grey, dorsal
nTPM: 97.1
2850 Male, age 76, both hemispheres 105.0
1840 Male, age 53, unknown 97.4
1831 Male, age 72, unknown 96.0
2464 Female, age 72, unknown 89.9
Periaquaductal grey, lateral
nTPM: 105.7
2272 Male, age 74, both hemispheres 132.9
2053 Male, age 18, unknown 94.3
2140 Male, age 76, both hemispheres 89.9
Pretectal area
nTPM: 122.6
1817 Female, age 42, unknown 156.9
2007 Male, age 72, unknown 143.1
1816 Male, age 51, unknown 142.2
1944 Female, age 72, unknown 132.5
1815 Male, age 53, unknown 128.8
2273 Male, age 74, both hemispheres 127.7
2667 Female, age 75, unknown 123.2
2224 Female, age 72, unknown 112.8
2825 Male, age 18, unknown 103.6
2316 Male, age 76, right hemisphere 96.3
2407 Male, age 75, both hemispheres 81.9
Red nucleus
nTPM: 108.6
1821 Female, age 72, unknown 152.7
2725 Female, age 75, unknown 127.8
2823 Male, age 76, right hemisphere 115.9
1954 Female, age 42, unknown 110.5
2785 Male, age 18, unknown 109.1
2503 Female, age 72, unknown 107.3
2769 Male, age 72, unknown 104.6
2227 Male, age 72, unknown 101.7
2588 Male, age 74, left hemisphere 97.8
1865 Male, age 51, unknown 97.5
1904 Male, age 53, unknown 96.4
2584 Male, age 75, left hemisphere 82.3
Substantia nigra
nTPM: 119.5
1889 Female, age 72, unknown 152.1
1916 Female, age 42, unknown 149.6
1941 Male, age 53, unknown 131.7
1851 Male, age 51, unknown 129.7
2241 Male, age 72, unknown 127.6
2665 Male, age 74, both hemispheres 117.9
2699 Male, age 18, unknown 109.2
2409 Female, age 72, unknown 103.8
2590 Female, age 75, unknown 102.2
2583 Male, age 75, right hemisphere 71.7
Superior colliculus
nTPM: 103.0
2587 Male, age 74, left hemisphere 135.1
1895 Male, age 76, right hemisphere 116.7
2087 Female, age 72, unknown 113.8
1796 Male, age 53, unknown 111.6
2261 Male, age 18, unknown 107.2
2668 Female, age 75, unknown 105.7
1839 Male, age 51, unknown 100.6
1913 Female, age 42, unknown 84.5
1995 Male, age 72, unknown 82.2
2664 Male, age 75, both hemispheres 73.0
Ventral tegmental area
nTPM: 108.5
2218 Male, age 76, both hemispheres 123.9
1915 Female, age 42, unknown 123.2
2410 Female, age 72, unknown 117.6
2223 Female, age 72, unknown 104.7
1942 Male, age 51, unknown 95.8
2021 Male, age 53, unknown 85.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 300.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 300.4
Samples: 183

Max nTPM: 563.5
Min nTPM: 184.7
Std nTPM: 69.1
Median nTPM: 289.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 563.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 494.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 493.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 475.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 468.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 466.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 462.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 437.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 435.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 434.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 431.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.7
FF:10158-103A5 76 years, female 132.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.6
Samples: 4

Max nTPM: 7.6
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 7.2
Sample C Male 6.3
Sample D Male 7.6
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 8.0
Sample C Male 7.0
Sample D Male 5.2
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 8.9
Min nTPM: 7.5
Sample B Female 8.9
Sample C Male 7.5
Sample D Male 8.1
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 7.7
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 7.7
Sample C Male 5.2
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 981.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 981.2
Samples: 4

Max nTPM: 1023.1
Min nTPM: 949.1
Sample A Male 1023.1
Sample B Male 949.4
Sample C Female 949.1
Sample D Female 1003.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 11.0
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 8.6

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