BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5493.0 nTPM
HPA Brain:4018.9 nTPM
GTEx:5493.0 nTPM
FANTOM5:211.9 Scaled Tags Per Million
Mouse:2947.4 nTPM
Rat:1679.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 4018.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4018.9
2666 Male, age 74, left hemisphere 5589.1
2586 Male, age 75, left hemisphere 5091.1
1870 Female, age 42, unknown 4509.4
2828 Female, age 72, unknown 4494.5
1830 Male, age 51, unknown 4192.2
1833 Male, age 53, unknown 3885.6
2411 Female, age 72, unknown 3800.0
2019 Male, age 18, unknown 3363.6
1827 Male, age 72, unknown 3106.8
2219 Male, age 76, both hemispheres 2156.2
Dorsal raphe nucleus
nTPM: 3429.8
2750 Male, age 76, both hemispheres 3780.5
2016 Female, age 72, unknown 3597.5
1828 Male, age 53, unknown 3534.8
2298 Female, age 72, unknown 3326.4
2047 Male, age 72, unknown 2910.1
Inferior colliculus
nTPM: 3408.0
2849 Male, age 72, unknown 3923.5
1848 Female, age 42, unknown 3416.4
1890 Male, age 53, unknown 3295.6
2097 Female, age 72, unknown 2996.7
Median raphe nucleus
nTPM: 3852.4
2220 Male, age 76, midline 3852.4
Periaquaductal grey, anterior
nTPM: 3112.7
2502 Female, age 75, unknown 3854.7
1795 Male, age 51, unknown 2938.4
1947 Male, age 18, unknown 2545.0
Periaquaductal grey, dorsal
nTPM: 3306.7
2850 Male, age 76, both hemispheres 3911.1
2464 Female, age 72, unknown 3471.8
1831 Male, age 72, unknown 3160.4
1840 Male, age 53, unknown 2683.3
Periaquaductal grey, lateral
nTPM: 3031.4
2140 Male, age 76, both hemispheres 3618.0
2053 Male, age 18, unknown 2990.3
2272 Male, age 74, both hemispheres 2485.7
Pretectal area
nTPM: 3115.0
2825 Male, age 18, unknown 3595.4
2407 Male, age 75, both hemispheres 3579.1
1817 Female, age 42, unknown 3486.2
1815 Male, age 53, unknown 3461.3
2667 Female, age 75, unknown 3413.0
2224 Female, age 72, unknown 3368.6
2007 Male, age 72, unknown 2852.6
1816 Male, age 51, unknown 2799.3
2316 Male, age 76, right hemisphere 2723.1
1944 Female, age 72, unknown 2652.0
2273 Male, age 74, both hemispheres 2334.6
Red nucleus
nTPM: 4016.5
2227 Male, age 72, unknown 4743.9
1865 Male, age 51, unknown 4719.6
2584 Male, age 75, left hemisphere 4602.6
2769 Male, age 72, unknown 4514.5
2785 Male, age 18, unknown 4505.6
1904 Male, age 53, unknown 4390.7
1954 Female, age 42, unknown 3911.1
1821 Female, age 72, unknown 3906.0
2503 Female, age 72, unknown 3572.6
2823 Male, age 76, right hemisphere 3552.1
2725 Female, age 75, unknown 2944.8
2588 Male, age 74, left hemisphere 2834.7
Substantia nigra
nTPM: 3051.7
2699 Male, age 18, unknown 4074.7
1889 Female, age 72, unknown 3392.7
1851 Male, age 51, unknown 3326.1
1916 Female, age 42, unknown 3264.4
1941 Male, age 53, unknown 3246.0
2665 Male, age 74, both hemispheres 3237.9
2583 Male, age 75, right hemisphere 2730.6
2241 Male, age 72, unknown 2708.1
2590 Female, age 75, unknown 2354.2
2409 Female, age 72, unknown 2181.7
Superior colliculus
nTPM: 3873.2
1913 Female, age 42, unknown 5290.3
2664 Male, age 75, both hemispheres 4754.4
2668 Female, age 75, unknown 4663.0
1995 Male, age 72, unknown 4379.6
2587 Male, age 74, left hemisphere 4171.3
1796 Male, age 53, unknown 3590.4
1839 Male, age 51, unknown 3269.2
2261 Male, age 18, unknown 2937.5
2087 Female, age 72, unknown 2913.6
1895 Male, age 76, right hemisphere 2762.2
Ventral tegmental area
nTPM: 3564.1
2223 Female, age 72, unknown 5749.7
1915 Female, age 42, unknown 3568.2
2021 Male, age 53, unknown 3272.4
2218 Male, age 76, both hemispheres 3246.5
1942 Male, age 51, unknown 3213.1
2410 Female, age 72, unknown 2334.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5493.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5493.0
Samples: 183

Max nTPM: 16155.3
Min nTPM: 1941.4
Std nTPM: 2584.9
Median nTPM: 4903.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 16155.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 15523.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 14604.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14305.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 13038.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 11978.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 11869.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 11542.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11404.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 10293.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9990.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.9
FF:10158-103A5 76 years, female 211.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2947.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2947.4
Samples: 4

Max nTPM: 3112.6
Min nTPM: 2838.7
Sample A 3112.6
Sample B 2907.7
Sample C 2838.7
Sample D 2930.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 1679.5
Rat sample Sample description nTPM
Midbrain
nTPM: 1679.5
Samples: 4

Max nTPM: 1935.1
Min nTPM: 1556.7
Sample A 1556.7
Sample A 1602.9
Sample A 1623.2
Sample A 1935.1

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