BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:905.1 nTPM
HPA Brain:324.9 nTPM
GTEx:905.1 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Mouse:118.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 324.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 314.2
2586 Male, age 75, left hemisphere 467.8
2666 Male, age 74, left hemisphere 389.3
2411 Female, age 72, unknown 329.6
2828 Female, age 72, unknown 314.3
1870 Female, age 42, unknown 305.8
1833 Male, age 53, unknown 288.5
1827 Male, age 72, unknown 277.2
1830 Male, age 51, unknown 272.1
2019 Male, age 18, unknown 261.9
2219 Male, age 76, both hemispheres 235.4
Dorsal raphe nucleus
nTPM: 287.1
2750 Male, age 76, both hemispheres 303.0
2016 Female, age 72, unknown 292.0
1828 Male, age 53, unknown 290.6
2298 Female, age 72, unknown 284.6
2047 Male, age 72, unknown 265.3
Inferior colliculus
nTPM: 265.4
1890 Male, age 53, unknown 273.5
2849 Male, age 72, unknown 266.8
2097 Female, age 72, unknown 266.5
1848 Female, age 42, unknown 254.8
Median raphe nucleus
nTPM: 244.6
2220 Male, age 76, midline 244.6
Periaquaductal grey, anterior
nTPM: 285.6
2502 Female, age 75, unknown 349.0
1795 Male, age 51, unknown 261.4
1947 Male, age 18, unknown 246.4
Periaquaductal grey, dorsal
nTPM: 257.7
1840 Male, age 53, unknown 307.1
2464 Female, age 72, unknown 286.2
1831 Male, age 72, unknown 242.3
2850 Male, age 76, both hemispheres 195.4
Periaquaductal grey, lateral
nTPM: 223.1
2053 Male, age 18, unknown 264.9
2140 Male, age 76, both hemispheres 213.6
2272 Male, age 74, both hemispheres 190.7
Pretectal area
nTPM: 239.5
2825 Male, age 18, unknown 286.3
2316 Male, age 76, right hemisphere 268.7
2407 Male, age 75, both hemispheres 268.7
2007 Male, age 72, unknown 252.3
1815 Male, age 53, unknown 248.0
1816 Male, age 51, unknown 239.9
1817 Female, age 42, unknown 238.3
2224 Female, age 72, unknown 235.7
2667 Female, age 75, unknown 203.2
1944 Female, age 72, unknown 202.0
2273 Male, age 74, both hemispheres 191.5
Red nucleus
nTPM: 314.7
2584 Male, age 75, left hemisphere 390.4
2503 Female, age 72, unknown 368.7
2769 Male, age 72, unknown 338.6
2227 Male, age 72, unknown 332.6
2588 Male, age 74, left hemisphere 326.7
1865 Male, age 51, unknown 322.5
1821 Female, age 72, unknown 321.6
1904 Male, age 53, unknown 314.5
1954 Female, age 42, unknown 286.8
2725 Female, age 75, unknown 268.8
2785 Male, age 18, unknown 267.1
2823 Male, age 76, right hemisphere 238.1
Substantia nigra
nTPM: 324.9
2665 Male, age 74, both hemispheres 396.2
1851 Male, age 51, unknown 392.1
2699 Male, age 18, unknown 371.8
2241 Male, age 72, unknown 347.0
2583 Male, age 75, right hemisphere 329.9
1916 Female, age 42, unknown 324.5
2590 Female, age 75, unknown 307.2
2409 Female, age 72, unknown 280.6
1941 Male, age 53, unknown 253.5
1889 Female, age 72, unknown 246.5
Superior colliculus
nTPM: 287.5
2664 Male, age 75, both hemispheres 410.6
2668 Female, age 75, unknown 324.5
2587 Male, age 74, left hemisphere 323.6
1796 Male, age 53, unknown 285.1
1839 Male, age 51, unknown 275.0
1913 Female, age 42, unknown 270.2
1995 Male, age 72, unknown 267.2
2261 Male, age 18, unknown 266.4
2087 Female, age 72, unknown 227.8
1895 Male, age 76, right hemisphere 224.2
Ventral tegmental area
nTPM: 304.8
1915 Female, age 42, unknown 341.2
2223 Female, age 72, unknown 329.9
2410 Female, age 72, unknown 307.6
2021 Male, age 53, unknown 306.5
1942 Male, age 51, unknown 299.5
2218 Male, age 76, both hemispheres 244.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 905.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 905.1
Samples: 183

Max nTPM: 2089.3
Min nTPM: 353.9
Std nTPM: 314.4
Median nTPM: 847.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2089.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1937.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1878.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1852.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1723.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1632.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1567.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1558.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1535.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1482.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1463.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.4
Samples: 4

Max nTPM: 137.1
Min nTPM: 101.3
Sample A 137.1
Sample B 125.2
Sample C 110.1
Sample D 101.3

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