BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:813.8 nTPM
HPA Brain:731.2 nTPM
GTEx:813.8 nTPM
FANTOM5:754.1 Scaled Tags Per Million
Macaque:759.4 nTPM
Mouse:115.5 nTPM
Rat:31.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 731.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 456.1
2828 Female, age 72, unknown 1124.0
1870 Female, age 42, unknown 590.2
2586 Male, age 75, left hemisphere 553.2
1827 Male, age 72, unknown 533.0
2666 Male, age 74, left hemisphere 452.9
1830 Male, age 51, unknown 328.6
1833 Male, age 53, unknown 283.5
2019 Male, age 18, unknown 264.4
2411 Female, age 72, unknown 241.5
2219 Male, age 76, both hemispheres 189.6
Dorsal raphe nucleus
nTPM: 420.1
2016 Female, age 72, unknown 750.4
1828 Male, age 53, unknown 473.5
2047 Male, age 72, unknown 324.0
2750 Male, age 76, both hemispheres 291.1
2298 Female, age 72, unknown 261.6
Inferior colliculus
nTPM: 340.9
1848 Female, age 42, unknown 490.5
2849 Male, age 72, unknown 425.9
1890 Male, age 53, unknown 230.7
2097 Female, age 72, unknown 216.6
Median raphe nucleus
nTPM: 367.4
2220 Male, age 76, midline 367.4
Periaquaductal grey, anterior
nTPM: 485.2
1795 Male, age 51, unknown 631.1
2502 Female, age 75, unknown 533.3
1947 Male, age 18, unknown 291.2
Periaquaductal grey, dorsal
nTPM: 551.2
1831 Male, age 72, unknown 850.1
2850 Male, age 76, both hemispheres 622.5
1840 Male, age 53, unknown 480.8
2464 Female, age 72, unknown 251.4
Periaquaductal grey, lateral
nTPM: 731.2
2053 Male, age 18, unknown 1029.6
2272 Male, age 74, both hemispheres 585.0
2140 Male, age 76, both hemispheres 579.0
Pretectal area
nTPM: 627.4
2407 Male, age 75, both hemispheres 1007.8
2316 Male, age 76, right hemisphere 979.4
2273 Male, age 74, both hemispheres 718.0
2825 Male, age 18, unknown 670.0
2224 Female, age 72, unknown 642.5
1815 Male, age 53, unknown 587.1
1816 Male, age 51, unknown 565.3
2667 Female, age 75, unknown 560.7
1944 Female, age 72, unknown 550.0
1817 Female, age 42, unknown 373.6
2007 Male, age 72, unknown 246.4
Red nucleus
nTPM: 365.0
2503 Female, age 72, unknown 543.4
2725 Female, age 75, unknown 469.9
2823 Male, age 76, right hemisphere 433.6
2769 Male, age 72, unknown 376.9
2588 Male, age 74, left hemisphere 366.0
2227 Male, age 72, unknown 363.6
2584 Male, age 75, left hemisphere 343.0
1865 Male, age 51, unknown 333.9
2785 Male, age 18, unknown 316.7
1821 Female, age 72, unknown 309.0
1904 Male, age 53, unknown 305.0
1954 Female, age 42, unknown 218.5
Substantia nigra
nTPM: 571.3
2699 Male, age 18, unknown 1076.7
1851 Male, age 51, unknown 775.6
2590 Female, age 75, unknown 600.9
2583 Male, age 75, right hemisphere 575.9
2409 Female, age 72, unknown 563.2
2665 Male, age 74, both hemispheres 525.1
1916 Female, age 42, unknown 483.8
1941 Male, age 53, unknown 442.3
1889 Female, age 72, unknown 351.7
2241 Male, age 72, unknown 318.2
Superior colliculus
nTPM: 731.1
1913 Female, age 42, unknown 1132.3
2664 Male, age 75, both hemispheres 1117.9
1995 Male, age 72, unknown 994.3
1796 Male, age 53, unknown 934.3
2087 Female, age 72, unknown 706.4
2587 Male, age 74, left hemisphere 613.0
1839 Male, age 51, unknown 577.3
2261 Male, age 18, unknown 538.8
2668 Female, age 75, unknown 413.0
1895 Male, age 76, right hemisphere 283.8
Ventral tegmental area
nTPM: 599.1
2021 Male, age 53, unknown 962.8
1915 Female, age 42, unknown 816.0
2223 Female, age 72, unknown 529.4
1942 Male, age 51, unknown 448.0
2218 Male, age 76, both hemispheres 420.9
2410 Female, age 72, unknown 417.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 813.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 813.8
Samples: 183

Max nTPM: 4267.2
Min nTPM: 110.2
Std nTPM: 598.2
Median nTPM: 664.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 4267.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 3388.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3005.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2796.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2563.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2397.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2347.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2165.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1990.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1741.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1729.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 754.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 754.1
FF:10158-103A5 76 years, female 754.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 759.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 466.8
Samples: 1

Max nTPM: 466.8
Min nTPM: 466.8
Sample A 466.8
Midbrain
nTPM: 548.2
Samples: 1

Max nTPM: 548.2
Min nTPM: 548.2
Sample A 548.2
Superior colliculi
nTPM: 759.4
Samples: 1

Max nTPM: 759.4
Min nTPM: 759.4
Sample A 759.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.5
Samples: 4

Max nTPM: 139.1
Min nTPM: 96.4
Sample A 107.0
Sample B 96.4
Sample C 139.1
Sample D 119.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 31.9
Rat sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 23.7
Sample A 46.7
Sample A 23.7
Sample A 27.1
Sample A 30.3

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