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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:873.9 nTPM
HPA Brain:1047.9 nTPM
GTEx:873.9 nTPM
FANTOM5:1843.4 Scaled Tags Per Million
Pig:3882.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1047.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 712.1
2816 Male, age 47, midline 825.2
1981 Female, age 72, midline 771.1
2194 Female, age 79, both hemispheres 725.0
2565 Male, age 75, midline 634.8
2048 Male, age 55, midline 604.7
Cervical spinal cord, dorsal horn
nTPM: 780.6
2296 Male, age 66, both hemispheres 1302.6
2173 Female, age 72, unknown 1127.4
2069 Male, age 47, both hemispheres 687.4
1877 Male, age 55, unknown 669.1
2297 Male, age 75, both hemispheres 486.3
2721 Male, age 90, both hemispheres 410.6
Cervical spinal cord, ventral horn
nTPM: 1047.9
2809 Male, age 90, both hemispheres 1283.2
2480 Male, age 75, both hemispheres 1166.3
2068 Male, age 55, unknown 1083.9
2295 Male, age 66, both hemispheres 1025.8
2820 Female, age 79, both hemispheres 959.1
2098 Female, age 72, unknown 769.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

873.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 873.9
Samples: 204

Max nTPM: 2035.2
Min nTPM: 163.4
Std nTPM: 364.3
Median nTPM: 825.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2035.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1950.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1870.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1828.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1756.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1706.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1680.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1641.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1618.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1608.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1572.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1489.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1487.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1453.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1449.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1448.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1425.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1382.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1339.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1336.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1333.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1330.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1310.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1295.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1293.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1288.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1284.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1278.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1276.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1264.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1260.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1246.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1221.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1219.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1209.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1200.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1198.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1191.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1180.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1175.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1174.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1171.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1169.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1143.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1131.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1110.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1106.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1103.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1102.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1098.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1076.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1071.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1052.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1048.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1046.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1044.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1044.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1043.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1041.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1039.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1028.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1025.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1021.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1020.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1014.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1008.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1005.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1001.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 999.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 999.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 994.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 985.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 978.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 975.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 974.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 950.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 947.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 944.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 944.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 944.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 934.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 932.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 925.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 914.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 905.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 897.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 895.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 892.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 878.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 876.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 874.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 870.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 865.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 863.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 861.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 858.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 843.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 842.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 842.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 835.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 834.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 832.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 817.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 816.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 815.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 815.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 807.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 805.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 805.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 803.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 797.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 794.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 794.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 793.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 789.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 783.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 780.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 780.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 779.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 778.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 776.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 774.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 773.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 771.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 768.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 762.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 755.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 751.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 742.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 741.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 738.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 725.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 722.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 713.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 697.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 695.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 692.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 687.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 682.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 682.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 680.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 680.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 672.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 670.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 669.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 662.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 661.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 661.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 659.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 656.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 652.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 651.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 638.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 636.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 634.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 623.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 616.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 608.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 596.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 588.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 581.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 578.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 577.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 571.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 570.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 561.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 561.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 556.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 552.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 549.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 548.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 542.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 538.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 513.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 490.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 474.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 474.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 465.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 442.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 433.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 430.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 417.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 413.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 408.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 402.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 401.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 383.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 372.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 363.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 349.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 334.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 334.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 327.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 325.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 320.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 307.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 295.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 286.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 277.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 252.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 238.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 184.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 163.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 163.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1843.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1843.4
FF:10181-103D1 60 years, female 2148.6
FF:10159-103A6 76 years, female 1538.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3882.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3304.4
Samples: 4

Max nTPM: 4234.2
Min nTPM: 2533.5
Sample A Female 2633.3
Sample B Female 4234.2
Sample C Male 2533.5
Sample D Male 3816.6
Ventral spinal cord
nTPM: 3882.2
Samples: 4

Max nTPM: 5434.3
Min nTPM: 2777.8
Sample A Female 2861.0
Sample B Female 4455.8
Sample C Male 2777.8
Sample D Male 5434.3

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