On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
336.2
nTPM
HPA Brain:
867.2
nTPM
GTEx:
336.2
nTPM
FANTOM5:
1428.1
Scaled Tags Per Million
Macaque:
448.4
nTPM
Mouse:
411.9
nTPM
Rat:
2132.7
nTPM
Pig:
2278.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
867.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 753.9
1830
Male, age 51, unknown
1090.0
1833
Male, age 53, unknown
955.0
2411
Female, age 72, unknown
880.9
2019
Male, age 18, unknown
786.9
1870
Female, age 42, unknown
752.9
2219
Male, age 76, both hemispheres
688.3
2828
Female, age 72, unknown
670.0
2586
Male, age 75, left hemisphere
634.7
2666
Male, age 74, left hemisphere
571.4
1827
Male, age 72, unknown
508.5
Dorsal raphe nucleus nTPM: 522.2
2750
Male, age 76, both hemispheres
1129.9
2016
Female, age 72, unknown
526.8
1828
Male, age 53, unknown
465.0
2047
Male, age 72, unknown
276.1
2298
Female, age 72, unknown
213.0
Inferior colliculus nTPM: 405.4
2849
Male, age 72, unknown
459.0
1848
Female, age 42, unknown
442.5
1890
Male, age 53, unknown
441.1
2097
Female, age 72, unknown
279.1
Median raphe nucleus nTPM: 542.1
2220
Male, age 76, midline
542.1
Periaquaductal grey, anterior nTPM: 358.9
2502
Female, age 75, unknown
434.1
1947
Male, age 18, unknown
364.0
1795
Male, age 51, unknown
278.5
Periaquaductal grey, dorsal nTPM: 290.0
2464
Female, age 72, unknown
495.4
1831
Male, age 72, unknown
362.4
2850
Male, age 76, both hemispheres
162.3
1840
Male, age 53, unknown
139.8
Periaquaductal grey, lateral nTPM: 312.3
2053
Male, age 18, unknown
393.0
2272
Male, age 74, both hemispheres
367.9
2140
Male, age 76, both hemispheres
175.9
Pretectal area nTPM: 389.9
2316
Male, age 76, right hemisphere
627.4
2407
Male, age 75, both hemispheres
561.6
1815
Male, age 53, unknown
555.5
2825
Male, age 18, unknown
445.6
1817
Female, age 42, unknown
404.0
2007
Male, age 72, unknown
388.7
2224
Female, age 72, unknown
316.3
2273
Male, age 74, both hemispheres
290.6
2667
Female, age 75, unknown
248.7
1944
Female, age 72, unknown
244.9
1816
Male, age 51, unknown
205.4
Red nucleus nTPM: 867.2
1865
Male, age 51, unknown
1071.9
2503
Female, age 72, unknown
974.4
2227
Male, age 72, unknown
952.0
1904
Male, age 53, unknown
933.2
2588
Male, age 74, left hemisphere
931.5
2769
Male, age 72, unknown
887.5
2785
Male, age 18, unknown
881.3
1821
Female, age 72, unknown
879.6
2823
Male, age 76, right hemisphere
871.0
1954
Female, age 42, unknown
733.6
2725
Female, age 75, unknown
649.8
2584
Male, age 75, left hemisphere
640.7
Substantia nigra nTPM: 500.1
2590
Female, age 75, unknown
649.5
2583
Male, age 75, right hemisphere
623.4
1851
Male, age 51, unknown
566.5
2699
Male, age 18, unknown
542.5
1889
Female, age 72, unknown
520.2
2665
Male, age 74, both hemispheres
509.5
2409
Female, age 72, unknown
462.5
1941
Male, age 53, unknown
457.7
1916
Female, age 42, unknown
336.8
2241
Male, age 72, unknown
332.7
Superior colliculus nTPM: 571.1
1913
Female, age 42, unknown
960.9
1995
Male, age 72, unknown
884.6
1839
Male, age 51, unknown
631.4
2668
Female, age 75, unknown
628.6
2587
Male, age 74, left hemisphere
622.9
1895
Male, age 76, right hemisphere
576.5
1796
Male, age 53, unknown
451.3
2664
Male, age 75, both hemispheres
382.3
2087
Female, age 72, unknown
314.6
2261
Male, age 18, unknown
258.3
Ventral tegmental area nTPM: 670.4
2223
Female, age 72, unknown
1249.7
2410
Female, age 72, unknown
655.9
2218
Male, age 76, both hemispheres
581.6
2021
Male, age 53, unknown
564.0
1942
Male, age 51, unknown
553.5
1915
Female, age 42, unknown
417.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
336.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 336.2
Samples: 183
Max nTPM: 1346.3
Min nTPM: 10.5
Std nTPM: 221.6
Median nTPM: 274.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1346.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1290.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
991.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
909.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
878.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
836.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
796.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
792.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
756.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
754.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
736.8
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
732.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
732.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
716.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
698.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
695.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
634.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
628.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
627.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
623.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
592.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
590.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
580.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
576.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
567.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
543.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
538.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
531.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
530.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
524.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
521.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
521.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
511.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
495.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
481.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
479.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
477.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
474.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
471.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
468.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
467.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
462.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
462.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
459.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
454.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
453.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
449.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
448.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
443.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
436.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
435.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
425.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
420.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
420.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
409.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
404.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
403.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
394.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
394.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
391.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
391.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
378.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
374.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
374.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
362.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
356.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
354.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
353.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
345.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
345.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
337.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
337.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
337.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
336.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
332.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
330.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
330.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
326.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
322.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
319.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
306.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
303.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
303.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
299.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
298.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
298.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
296.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
285.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
280.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
279.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
275.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
274.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
272.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
270.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
269.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
264.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
263.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
263.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
262.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
261.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
260.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
258.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
257.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
254.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
254.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
253.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
251.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
244.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
242.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
239.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
238.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
238.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
238.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
237.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
235.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
234.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
220.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
217.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
217.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
214.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
210.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
209.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
208.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
208.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
207.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
202.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
199.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
194.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
192.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
190.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
190.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
188.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
187.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
187.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
186.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
185.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
185.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
185.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
184.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
182.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
181.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
177.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
171.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
170.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
166.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
164.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
160.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
154.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
152.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
151.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
139.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
139.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
137.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
137.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
133.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
128.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
128.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
127.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
126.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
123.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
120.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
117.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
115.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
115.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
114.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
111.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
109.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
109.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
108.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
101.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
96.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
93.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
90.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
85.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
84.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
73.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
70.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
64.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
59.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
58.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
48.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
30.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
10.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
448.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 448.4
Samples: 1
Max nTPM: 448.4
Min nTPM: 448.4
Sample A
448.4
Midbrain nTPM: 155.8
Samples: 1
Max nTPM: 155.8
Min nTPM: 155.8
Sample A
155.8
Superior colliculi nTPM: 197.8
Samples: 1
Max nTPM: 197.8
Min nTPM: 197.8
Sample A
197.8
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2278.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1882.3
Samples: 3
Max nTPM: 2115.3
Min nTPM: 1614.6
Sample A
Female
2115.3
Sample B
Female
1614.6
Sample C
Male
1916.9
Midbrain nTPM: 1856.6
Samples: 3
Max nTPM: 2883.8
Min nTPM: 1315.9
Sample B
Female
2883.8
Sample C
Male
1315.9
Sample D
Male
1370.0
Periaqueductal gray nTPM: 1677.8
Samples: 3
Max nTPM: 2036.5
Min nTPM: 1059.6
Sample B
Female
1937.4
Sample C
Male
1059.6
Sample D
Male
2036.5
Superior colliculi nTPM: 2278.1
Samples: 4
Max nTPM: 3310.2
Min nTPM: 1247.5
Sample A
Female
2087.7
Sample B
Female
1247.5
Sample C
Male
2467.1
Sample D
Male
3310.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
411.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 411.9
Samples: 4
Max nTPM: 489.1
Min nTPM: 330.5
Sample A
330.5
Sample B
489.1
Sample C
426.3
Sample D
401.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2132.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 2132.7
Samples: 4
Max nTPM: 2184.8
Min nTPM: 2087.3
Sample A
2184.8
Sample A
2151.5
Sample A
2087.3
Sample A
2107.3
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The Human Protein Atlas project is funded
