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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:141.4 nTPM
HPA Brain:320.6 nTPM
GTEx:141.4 nTPM
FANTOM5:300.5 Scaled Tags Per Million
Pig:133.6 nTPM
Mouse:324.3 nTPM
Allen mouse:20.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.6
Sample id Sample description nTPM
Amygdala
nTPM: 150.0
2517 Female, age 94, left hemisphere 259.8
1987 Female, age 91, left hemisphere 204.2
2814 Male, age 76, right hemisphere 123.3
2514 Male, age 75, right hemisphere 105.3
2695 Female, age 67, right hemisphere 57.3
Basal amygdala
nTPM: 320.6
2685 Female, age 94, left hemisphere 460.5
2243 Female, age 91, right hemisphere 449.4
2110 Male, age 80, left hemisphere 386.0
2827 Female, age 67, right hemisphere 270.6
1955 Male, age 76, both hemispheres 187.2
2609 Male, age 75, right hemisphere 169.6
Central amygdala
nTPM: 219.0
2826 Female, age 94, left hemisphere 384.2
2239 Male, age 80, left hemisphere 290.4
2701 Female, age 91, right hemisphere 196.0
2515 Male, age 75, right hemisphere 113.7
1905 Male, age 76, both hemispheres 110.8
Corticomedial amygdala
nTPM: 312.0
2829 Male, age 80, left hemisphere 447.8
2242 Female, age 91, right hemisphere 439.9
2535 Female, age 67, right hemisphere 365.5
2429 Female, age 94, left hemisphere 311.4
2240 Male, age 76, both hemispheres 162.1
2428 Male, age 75, right hemisphere 145.3
Lateral amygdala
nTPM: 226.5
2534 Female, age 94, left hemisphere 483.3
2256 Male, age 80, left hemisphere 295.0
2255 Female, age 91, right hemisphere 249.4
1883 Male, age 76, both hemispheres 129.7
2830 Female, age 67, right hemisphere 124.4
2516 Male, age 75, right hemisphere 77.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 141.4
Samples: 181

Max nTPM: 442.8
Min nTPM: 13.3
Std nTPM: 80.8
Median nTPM: 124.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 442.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 439.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 364.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 364.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 363.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 357.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 308.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 306.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 290.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 286.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 283.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 282.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 270.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 267.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 255.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 250.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 250.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 242.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 241.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 240.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 240.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 238.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 229.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 226.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 223.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 221.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 219.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 218.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 213.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 212.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 209.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 209.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 205.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 205.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 202.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 201.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 201.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 199.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 198.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 195.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 194.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 192.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 185.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 185.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 183.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 183.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 178.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 172.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 170.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 169.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 165.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 164.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 163.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 161.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 161.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 158.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 158.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 157.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 156.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 155.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 152.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 148.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 148.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 143.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 143.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 143.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 137.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 135.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 133.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 133.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 133.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 132.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 131.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 128.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 128.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 127.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 126.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 124.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 121.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 121.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 119.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 113.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 113.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 111.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 111.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 111.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 111.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 110.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 109.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 108.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 101.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 100.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 100.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 97.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 97.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 95.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 94.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 94.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 93.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 92.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 90.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 89.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 88.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 87.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 85.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 84.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 83.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 83.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 81.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 77.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 76.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 76.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 75.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 75.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 73.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 71.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 70.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 69.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 69.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 68.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 68.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 67.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 66.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 65.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 65.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 60.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 58.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 52.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 49.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 47.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 46.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 39.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 33.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 29.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 29.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 13.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

300.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 300.5
FF:10151-102I7 76 years, female 300.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.6
Pig sample Sample description nTPM
Amygdala
nTPM: 133.6
Samples: 4

Max nTPM: 215.1
Min nTPM: 76.8
Sample A Female 215.1
Sample B Female 76.8
Sample C Male 109.9
Sample D Male 132.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 324.3
Samples: 4

Max nTPM: 335.7
Min nTPM: 306.9
Sample A Male 332.9
Sample B Male 321.7
Sample C Female 335.7
Sample D Female 306.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.7
71608455 Antisense, RP_050927_01_G05, Mouse strain C57BL/6J (56 days, male) 21.4
544328 Antisense, RP_040625_01_H06, Mouse strain C57BL/6J (56 days, male) 20.0

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