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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:245.6 nTPM
FANTOM5:670.6 Scaled Tags Per Million
Pig:395.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA069318
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 245.6
Samples: 300

Max nTPM: 717.6
Min nTPM: 8.0
Std nTPM: 146.7
Median nTPM: 235.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 717.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 614.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 552.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 548.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 547.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 544.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 536.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 534.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 530.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 530.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 523.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 517.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 512.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 510.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 499.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 498.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 496.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 493.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 493.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 481.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 469.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 466.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 462.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 461.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 459.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 456.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 447.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 445.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 443.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 442.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 440.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 437.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 436.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 436.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 434.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 429.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 427.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 427.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 425.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 424.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 415.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 412.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 412.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 411.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 410.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 407.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 406.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 405.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 405.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 405.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 404.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 402.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 402.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 402.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 402.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 395.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 391.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 390.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 386.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 384.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 383.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 382.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 382.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 382.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 381.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 381.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 377.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 376.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 376.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 375.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 369.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 368.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 364.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 364.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 363.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 359.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 359.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 357.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 357.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 356.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 349.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 348.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 347.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 344.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 343.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 341.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 341.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 340.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 339.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 337.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 336.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 333.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 331.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 331.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 330.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 329.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 323.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 323.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 320.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 317.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 317.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 314.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 311.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 311.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 311.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 307.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 307.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 306.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 304.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 301.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 300.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 298.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 293.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 289.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 286.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 284.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 283.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 283.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 282.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 280.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 278.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 277.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 277.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 271.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 271.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 270.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 270.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 270.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 269.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 269.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 268.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 266.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 266.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 265.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 264.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 262.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 259.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 258.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 256.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 256.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 252.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 250.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 247.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 245.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 244.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 242.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 241.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 241.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 239.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 237.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 234.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 233.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 231.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 230.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 228.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 227.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 226.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 226.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 222.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 220.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 217.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 213.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 211.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 210.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 210.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 205.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 204.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 203.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 203.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 202.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 202.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 198.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 198.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 194.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 194.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 193.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 193.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 192.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 187.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 186.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 185.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 183.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 181.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 180.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 178.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 178.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 178.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 177.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 175.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 174.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 174.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 174.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 174.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 172.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 169.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 166.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 166.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 162.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 162.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 160.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 157.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 157.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 155.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 154.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 152.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 150.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 145.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 144.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 142.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 141.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 141.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 138.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 135.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 132.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 131.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 129.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 127.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 124.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 119.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 118.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 116.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 114.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 111.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 110.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 109.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 108.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 108.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 108.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 107.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 106.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 102.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 102.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 101.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 98.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 98.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 97.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 96.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 96.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 92.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 91.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 91.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 90.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 87.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 86.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 84.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 81.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 80.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 80.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 78.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 78.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 77.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 77.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 74.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 73.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 72.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 72.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 71.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 69.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 69.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 68.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 67.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 65.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 65.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 65.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 62.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 60.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 60.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 55.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 53.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 52.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 52.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 50.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 47.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 46.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 46.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 45.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 42.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 40.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 40.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 38.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 37.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 29.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 28.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 27.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 25.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 22.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 19.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 18.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 10.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 8.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

670.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 670.6
FF:10164-103B2 76 years, female 670.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.5
Pig sample Sample description nTPM
Caudate
nTPM: 395.5
Samples: 4

Max nTPM: 515.7
Min nTPM: 293.7
Sample A Female 293.7
Sample B Female 384.5
Sample C Male 515.7
Sample D Male 388.0

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