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  • NDUFS5
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:724.0 nTPM
HPA Brain:173.0 nTPM
GTEx:724.0 nTPM
FANTOM5:354.6 Scaled Tags Per Million
Pig:147.4 nTPM
Mouse:427.8 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.0
Sample id Sample description nTPM
Amygdala
nTPM: 161.9
2814 Male, age 76, right hemisphere 190.5
2514 Male, age 75, right hemisphere 167.4
2695 Female, age 67, right hemisphere 156.3
1987 Female, age 91, left hemisphere 148.7
2517 Female, age 94, left hemisphere 146.5
Basal amygdala
nTPM: 163.9
2243 Female, age 91, right hemisphere 190.1
1955 Male, age 76, both hemispheres 182.0
2110 Male, age 80, left hemisphere 181.2
2609 Male, age 75, right hemisphere 155.0
2685 Female, age 94, left hemisphere 144.7
2827 Female, age 67, right hemisphere 130.3
Central amygdala
nTPM: 157.1
2826 Female, age 94, left hemisphere 176.4
1905 Male, age 76, both hemispheres 174.4
2239 Male, age 80, left hemisphere 166.8
2701 Female, age 91, right hemisphere 143.6
2515 Male, age 75, right hemisphere 124.3
Corticomedial amygdala
nTPM: 173.0
2242 Female, age 91, right hemisphere 196.1
2829 Male, age 80, left hemisphere 189.0
2240 Male, age 76, both hemispheres 178.0
2535 Female, age 67, right hemisphere 176.0
2429 Female, age 94, left hemisphere 164.3
2428 Male, age 75, right hemisphere 134.8
Lateral amygdala
nTPM: 144.7
1883 Male, age 76, both hemispheres 195.6
2534 Female, age 94, left hemisphere 168.4
2516 Male, age 75, right hemisphere 143.5
2830 Female, age 67, right hemisphere 129.6
2256 Male, age 80, left hemisphere 119.4
2255 Female, age 91, right hemisphere 111.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

724.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 724.0
Samples: 181

Max nTPM: 2746.2
Min nTPM: 330.3
Std nTPM: 285.0
Median nTPM: 682.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2746.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2061.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1701.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1632.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1541.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1364.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1310.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1210.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1178.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1103.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1054.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1051.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1010.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1001.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 996.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 995.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 989.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 960.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 953.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 951.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 950.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 948.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 946.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 941.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 941.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 938.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 931.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 930.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 925.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 919.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 913.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 909.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 887.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 881.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 877.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 862.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 855.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 845.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 823.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 822.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 817.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 817.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 813.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 803.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 802.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 801.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 799.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 799.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 799.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 781.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 776.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 775.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 775.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 774.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 765.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 765.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 764.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 762.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 761.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 759.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 759.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 749.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 748.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 740.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 739.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 737.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 737.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 729.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 729.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 723.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 721.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 720.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 715.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 710.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 709.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 709.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 708.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 705.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 705.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 704.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 702.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 702.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 700.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 694.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 694.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 694.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 692.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 691.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 687.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 685.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 682.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 679.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 679.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 678.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 678.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 675.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 674.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 674.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 671.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 668.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 666.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 664.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 662.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 659.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 654.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 652.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 651.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 646.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 645.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 644.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 637.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 636.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 631.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 631.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 626.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 613.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 607.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 606.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 598.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 596.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 592.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 590.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 584.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 580.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 578.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 576.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 576.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 573.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 573.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 572.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 571.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 571.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 568.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 564.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 558.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 554.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 553.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 552.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 548.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 547.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 547.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 546.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 535.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 534.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 531.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 527.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 527.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 527.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 518.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 516.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 505.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 504.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 504.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 502.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 497.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 494.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 493.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 489.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 487.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 483.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 479.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 475.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 473.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 462.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 462.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 461.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 439.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 437.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 431.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 427.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 422.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 418.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 417.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 415.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 411.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 408.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 389.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 388.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 350.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 341.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 330.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 354.6
FF:10151-102I7 76 years, female 354.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.4
Pig sample Sample description nTPM
Amygdala
nTPM: 147.4
Samples: 4

Max nTPM: 194.6
Min nTPM: 108.7
Sample A Female 194.6
Sample B Female 152.1
Sample C Male 134.1
Sample D Male 108.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 427.8
Samples: 4

Max nTPM: 438.1
Min nTPM: 408.3
Sample A Male 408.3
Sample B Male 430.8
Sample C Female 438.1
Sample D Female 433.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 3.2
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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