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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:191.5 nTPM
GTEx:191.5 nTPM
FANTOM5:275.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 191.5
Samples: 105

Max nTPM: 250.9
Min nTPM: 113.9
Std nTPM: 25.2
Median nTPM:
376_1 75 years, female 250.9
375_1 74 years, female 244.0
35_1 74 years, female 238.2
17_1 71 years, male 236.4
2_1 77 years, female 236.2
321_1 62 years, female 230.2
384_1 83 years, male 228.0
153_1 70 years, female 226.9
379_1 60 years, male 226.4
377_1 82 years, female 226.1
322_1 76 years, male 225.9
404_1 82 years, female 224.8
177_1 74 years, male 224.1
396_1 62 years, male 222.3
189_1 76 years, male 221.1
246_1 77 years, male 220.9
319_1 81 years, male 219.1
173_1 67 years, male 218.7
265_1 87 years, male 218.1
120_1 70 years, female 218.0
6_1 73 years, female 216.2
229_1 69 years, female 216.2
142_1 61 years, female 216.0
162_1 79 years, female 214.6
452_1 88 years, female 214.6
526_1 61 years, male 210.8
126_1 63 years, male 209.2
414_1 84 years, female 208.2
4_1 88 years, female 206.5
406_1 79 years, male 206.4
425_1 59 years, female 204.4
394_1 75 years, female 203.6
389_1 86 years, female 203.3
317_1 60 years, male 201.4
243_1 75 years, male 200.9
386_1 76 years, male 199.9
145_1 84 years, male 199.2
355_1 70 years, female 198.7
335_1 73 years, female 198.3
349_1 83 years, male 197.3
405_1 91 years, male 197.3
315_1 62 years, female 196.9
237_1 82 years, male 195.8
115_1 83 years, male 194.5
99_1 64 years, male 194.4
81_1 67 years, male 192.7
286_1 68 years, female 192.6
137_1 83 years, male 191.0
347_1 72 years, male 190.9
254_1 77 years, female 190.7
495_1 57 years, female 190.7
163_1 78 years, male 190.2
295_1 61 years, female 189.8
119_1 70 years, female 188.5
320_1 89 years, female 188.0
217_1 76 years, male 187.6
41_1 94 years, female 187.3
447_1 81 years, male 187.3
313_1 79 years, female 186.7
354_1 81 years, female 186.7
503_1 68 years, male 186.3
308_1 70 years, female 185.4
9_1 66 years, female 184.6
415_1 77 years, female 184.5
413_1 59 years, female 183.8
324_1 76 years, male 183.5
499_1 55 years, female 183.5
501_1 88 years, male 183.4
172_1 72 years, female 182.1
43_1 64 years, female 180.7
468_1 89 years, male 179.8
266_1 85 years, male 179.6
293_1 68 years, female 178.9
109_1 81 years, female 178.8
18_1 88 years, male 176.9
466_1 57 years, female 176.9
316_1 62 years, male 176.0
350_1 84 years, female 176.0
352_1 62 years, male 173.8
139_1 64 years, female 173.4
292_1 71 years, male 172.3
251_1 78 years, male 172.0
356_1 87 years, female 172.0
506_1 65 years, male 172.0
42_1 85 years, male 171.5
311_1 78 years, male 171.3
291_1 76 years, male 171.0
353_1 82 years, female 170.8
318_1 68 years, male 169.5
518_1 75 years, female 168.9
264_1 73 years, female 168.6
351_1 91 years, male 165.4
307_1 66 years, female 164.1
348_1 84 years, male 162.9
288_1 66 years, female 161.8
480_1 63 years, male 161.2
117_1 61 years, male 160.4
314_1 67 years, male 157.9
89_1 63 years, male 157.7
517_1 88 years, male 156.3
32_1 67 years, male 152.0
218_1 71 years, female 145.0
149_1 88 years, male 137.2
491_1 89 years, female 120.6
490_1 67 years, female 113.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

275.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 275.8
FF:10030-101E3 24-65 years, mixed 275.8

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