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AHCYL1
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  • TISSUE

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  • AHCYL1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:235.9 nTPM
HPA Brain:458.4 nTPM
GTEx:235.9 nTPM
FANTOM5:224.3 Scaled Tags Per Million
Pig:245.1 nTPM
Mouse:269.6 nTPM
Allen mouse:13.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 288.9
2828 Female, age 72, unknown 418.8
2586 Male, age 75, left hemisphere 377.3
1827 Male, age 72, unknown 341.1
1870 Female, age 42, unknown 320.8
1833 Male, age 53, unknown 284.5
2411 Female, age 72, unknown 268.8
2666 Male, age 74, left hemisphere 258.5
1830 Male, age 51, unknown 236.0
2019 Male, age 18, unknown 203.3
2219 Male, age 76, both hemispheres 180.0
Dorsal raphe nucleus
nTPM: 409.5
2016 Female, age 72, unknown 531.4
1828 Male, age 53, unknown 461.3
2298 Female, age 72, unknown 417.6
2047 Male, age 72, unknown 377.3
2750 Male, age 76, both hemispheres 259.8
Inferior colliculus
nTPM: 387.1
1848 Female, age 42, unknown 444.8
2849 Male, age 72, unknown 408.9
2097 Female, age 72, unknown 372.5
1890 Male, age 53, unknown 322.0
Median raphe nucleus
nTPM: 274.8
2220 Male, age 76, midline 274.8
Periaquaductal grey, anterior
nTPM: 337.4
1795 Male, age 51, unknown 357.7
2502 Female, age 75, unknown 337.6
1947 Male, age 18, unknown 317.1
Periaquaductal grey, dorsal
nTPM: 458.4
1840 Male, age 53, unknown 554.5
2850 Male, age 76, both hemispheres 524.8
2464 Female, age 72, unknown 384.6
1831 Male, age 72, unknown 369.6
Periaquaductal grey, lateral
nTPM: 427.4
2140 Male, age 76, both hemispheres 550.2
2053 Male, age 18, unknown 463.0
2272 Male, age 74, both hemispheres 268.9
Pretectal area
nTPM: 361.6
2224 Female, age 72, unknown 459.5
2667 Female, age 75, unknown 458.9
1944 Female, age 72, unknown 406.5
2273 Male, age 74, both hemispheres 391.1
2316 Male, age 76, right hemisphere 376.4
1816 Male, age 51, unknown 374.2
2825 Male, age 18, unknown 365.8
1817 Female, age 42, unknown 342.9
1815 Male, age 53, unknown 304.0
2407 Male, age 75, both hemispheres 265.9
2007 Male, age 72, unknown 232.1
Red nucleus
nTPM: 285.1
1821 Female, age 72, unknown 339.1
2503 Female, age 72, unknown 335.0
1954 Female, age 42, unknown 334.4
2769 Male, age 72, unknown 331.7
2227 Male, age 72, unknown 331.1
2823 Male, age 76, right hemisphere 308.3
2725 Female, age 75, unknown 298.8
1904 Male, age 53, unknown 263.7
1865 Male, age 51, unknown 254.8
2588 Male, age 74, left hemisphere 239.2
2785 Male, age 18, unknown 195.2
2584 Male, age 75, left hemisphere 190.1
Substantia nigra
nTPM: 369.5
2699 Male, age 18, unknown 605.4
1916 Female, age 42, unknown 466.8
2241 Male, age 72, unknown 384.8
2409 Female, age 72, unknown 383.0
1851 Male, age 51, unknown 370.0
1889 Female, age 72, unknown 338.0
2590 Female, age 75, unknown 323.3
2665 Male, age 74, both hemispheres 317.0
1941 Male, age 53, unknown 260.0
2583 Male, age 75, right hemisphere 246.5
Superior colliculus
nTPM: 327.6
2087 Female, age 72, unknown 387.4
1796 Male, age 53, unknown 387.0
2664 Male, age 75, both hemispheres 369.3
1839 Male, age 51, unknown 356.6
2261 Male, age 18, unknown 343.7
1995 Male, age 72, unknown 326.0
1913 Female, age 42, unknown 295.6
2587 Male, age 74, left hemisphere 295.3
2668 Female, age 75, unknown 258.9
1895 Male, age 76, right hemisphere 256.4
Ventral tegmental area
nTPM: 339.7
2021 Male, age 53, unknown 394.3
1915 Female, age 42, unknown 384.1
2410 Female, age 72, unknown 353.2
1942 Male, age 51, unknown 342.7
2218 Male, age 76, both hemispheres 322.5
2223 Female, age 72, unknown 241.2

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 235.9
Samples: 183

Max nTPM: 817.9
Min nTPM: 52.5
Std nTPM: 125.6
Median nTPM: 207.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 817.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 716.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 611.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 589.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 579.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 567.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 546.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 529.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 515.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 511.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 478.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 471.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 466.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 460.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 439.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 434.3
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 418.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 407.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 396.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 377.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 369.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 364.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 348.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 345.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 343.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 343.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 340.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 340.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 332.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 331.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 329.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 324.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 318.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 318.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 317.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 316.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 310.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 300.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 294.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 293.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 290.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 290.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 289.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 286.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 285.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 281.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 280.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 279.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 278.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 278.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 273.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 270.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 263.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 262.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 262.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 259.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 259.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 255.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 253.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 253.7
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 252.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 251.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 251.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 250.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 250.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 249.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 247.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 247.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 243.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 243.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 242.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 241.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 235.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 230.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 227.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 227.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 226.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 223.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 221.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 219.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 218.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 217.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 216.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 215.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 215.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 214.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 212.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 212.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 210.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 210.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 209.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 207.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 207.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 206.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 203.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 203.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 203.5
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 203.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 200.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 199.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 197.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 196.5
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 195.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 195.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 195.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 194.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 194.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 193.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 190.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 190.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 187.5
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 187.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 187.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 186.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 186.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 186.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 185.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 185.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 179.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 178.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 175.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 174.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 173.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 172.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 172.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 168.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 166.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 163.3
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 162.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 162.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 161.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 160.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 159.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 158.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 157.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 156.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 156.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 154.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 153.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 150.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 149.0
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 147.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 146.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 145.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 145.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 142.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 140.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 140.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 138.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 138.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 134.8
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 132.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 132.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 129.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 127.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 126.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 125.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 124.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 124.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 119.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 117.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 114.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 112.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 107.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 105.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 103.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 100.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 99.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 93.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 90.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 89.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 88.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 79.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 77.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 76.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 74.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 71.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 68.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 61.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.3
FF:10158-103A5 76 years, female 224.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 229.0
Samples: 4

Max nTPM: 252.5
Min nTPM: 207.8
Sample A Female 229.6
Sample B Female 226.2
Sample C Male 207.8
Sample D Male 252.5
Midbrain
nTPM: 245.1
Samples: 4

Max nTPM: 279.7
Min nTPM: 195.4
Sample A Female 279.7
Sample B Female 279.6
Sample C Male 225.5
Sample D Male 195.4
Periaqueductal gray
nTPM: 244.3
Samples: 3

Max nTPM: 295.4
Min nTPM: 209.3
Sample B Female 295.4
Sample C Male 228.1
Sample D Male 209.3
Superior colliculi
nTPM: 237.1
Samples: 4

Max nTPM: 262.5
Min nTPM: 224.7
Sample A Female 262.5
Sample B Female 231.3
Sample C Male 230.0
Sample D Male 224.7

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.6
Samples: 4

Max nTPM: 281.8
Min nTPM: 261.4
Sample A Male 263.5
Sample B Male 261.4
Sample C Female 281.8
Sample D Female 271.8

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
69838759 Antisense, RP_050324_01_G12, Mouse strain C57BL/6J (56 days, male) 13.3

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